> Von: Sharmista Saha > [...] > The following is an example of what I use when mapping onto > a reference sequence in GenBank format: > arcadia:/path/to/myProject> mira > --project=bchocse --job=mapping,genome,accurate,solexa > -AS:nop=1 > -SB:lsd=yes:bsn=bchoc_wt:bft=gbf:bbq=30 > >&log_assembly.txt } > > Logfile what i got is as follows: > bash: --project=bchocse: command not found As a side note: this is not the log file, that's the error you get on the command line. The log file would be the file called "log_assembly.txt" > Soplease now can you guide me where exactly I am wrong? > I am quitecurious to know, as I am excited to use your tool to assemble my > seqs. You cited almost the complete section of the manual, but stopped one line short of the response to your question. The very next line in the manual says: "Note 1: the above command has been splitted in multiple lines for better overview but should be entered in one line." Does this help you? :-) Regards, Bastien -- You have received this mail because you are subscribed to the mira_talk mailing list. For information on how to subscribe or unsubscribe, please visit http://www.chevreux.org/mira_mailinglists.html