I am not sure if I understood correctly, but NCBI always supplies the sequences (when saving to file) as sequences.fasta/.gb/.whatever .. This is just their default name. hth, Sven 2009/9/30 Sharmista Saha <sharmistasaha@xxxxxxxxxxxxxx> > one more query, although it is silly, but I can't resist to ask, the gb > file which I am downloading, is a particular gene file of a particular > species, from the given link. > http://www.ncbi.nlm.nih.gov/sites/gquery?itool=toolbar > > Although what I am saving is a seq.gb but, > I think I may be wrong in that also ( may be it does not contain the whole > database as required), can anyone suggest me what should be the correct one? > > Thanks and regards, > Sharmistha > > > On Wed, Sep 30, 2009 at 1:40 PM, Sharmista Saha < > sharmistasaha@xxxxxxxxxxxxxx> wrote: > >> Thanks for all the help. >> I will try your methods and get back to you. >> >> Regards, >> Sharmistha >> >> On Wed, Sep 30, 2009 at 1:24 PM, Bastien Chevreux <bach@xxxxxxxxxxxx>wrote: >> >>> > Subject: [mira_talk] Re: Assembly >>> > 3. I ran the respective command you provided, unfortunately, error >>> says: bash: mira: command not found. >>> > Now can it be easier for you to guide me to the root of my errors? >>> >>> You obviously did not install the mira executables in a system directory >>> (/usr/local/bin comes to mind) or in a private directory which is in your >>> PATH variable so that the shell can find it. >>> >>> Assuming you have no root priviledges and that you don't know how to >>> extend the PATH environment for your current shell (bash), the easiest way >>> would be to use the fully qualified name of the location where MIRA >>> currently resides as command. >>> >>> So, if the executable is in the directory "/some/where/in/your/system", >>> you need to prefix that directory to the mira command and things will run >>> fine: "/some/where/in/your/system/mira" >>> >>> B. >>> >>> -- >>> You have received this mail because you are subscribed to the mira_talk >>> mailing list. For information on how to subscribe or unsubscribe, please >>> visit http://www.chevreux.org/mira_mailinglists.html >>> >> >> >