[mira_talk] Re: Assembly

  • From: Sharmista Saha <sharmistasaha@xxxxxxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Thu, 1 Oct 2009 10:46:25 +0530

Thanks a lot  to both Peter and Bjorn.

Regards,
Sharmistha


On Wed, Sep 30, 2009 at 10:00 PM, Bjoern Usadel <usadel@xxxxxxxxxxxxxxxxx>wrote:

> Dear Sharmista,
>
> The best bet would probably to contact the relevant  PI for the Gossypium
> projects: It seems finished but not yet released.
>
> http://www.jgi.doe.gov/sequencing/statusreporter/psr.php?projectid=16065
>
>
> Cheers,
> Björn
>
> Peter wrote:
>
>> On Wed, Sep 30, 2009 at 4:11 PM, Sharmista Saha
>> <sharmistasaha@xxxxxxxxxxxxxx> wrote:
>>
>>
>>> Hi,
>>>
>>> @Peter, thank you, for your suggestion, even myself tried with that
>>> earlier,
>>> but I do not find Gossypium, where can i get that gb file of the same?
>>>
>>>
>>
>> You just asked for Arabidopsis thaliana - not cotton ;)
>>
>> I tried searching the genomes at the NCBI with Entrez for Gossypium,
>> but just found two chloroplasts:
>>
>> http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&term=Gossypium[orgn]<http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&term=Gossypium%5Borgn%5D>
>>
>> I am not a plant geneticist, so I have no idea if the whole genome has
>> been sequenced, and if it has, where else to look for it.
>>
>> Peter
>>
>>
>>
>
> --
> --------------------------------------------------
> Björn Usadel, PhD
> Max Planck Institute of Molecular Plant Physiology
> AG Integrative Carbon Biology
> Am Muehlenberg 1
> 14476 Potsdam-Golm
> Tel.: +49 331 5678153
> email usadel@xxxxxxxxxxxxxxxxx
> http://tinyurl.com/IntegrativeCarbonBiology
> --------------------------------------------------
>
>
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