[mira_talk] Re: Regarding Time-estimate of mira
- From: Ganga Jeena <ganga.jeena@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Tue, 21 Dec 2010 15:39:46 +0530
I have to do this assembly for 8 million reads454 in master-node/home within
230 GB space. How should I work it?
The log file generated is already 500 GB.
Is there some way | option to avoid log file generation and other
non-result files ?
Regards,
Ganga Jeena
On Tue, Dec 21, 2010 at 10:22 AM, Ganga Jeena <ganga.jeena@xxxxxxxxx> wrote:
>
>
> ---------- Forwarded message ----------
> From: Bastien Chevreux <bach@xxxxxxxxxxxx>
> Date: Mon, Dec 20, 2010 at 11:54 PM
> Subject: [mira_talk] Re: Regarding Time-estimate of mira
> To: mira_talk@xxxxxxxxxxxxx
>
>
> On Montag 20 Dezember 2010 Ganga Jeena wrote:
> > I am trying to do assembly of 8 million reads with mira
> > Configuration of system is as follows:
> > 512 GB RAM
> > 8 hexa-core processors
> >
> > miramem gives me a memory estimate of 66.6 GB.
> > How to get the time-estimate for assembly of data on my system.
>
>
> It is impossible to estimate the time needed, there are too many sequencing
> project depending variables which make things absolutely unpredictable.
>
> Sorry, you'll have to try it out with your data.
>
> B.
>
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