[mira_talk] Re: scaffolded contigs
- From: Adnan Niazi <niazi84@xxxxxxxxxxx>
- To: mira talk <mira_talk@xxxxxxxxxxxxx>
- Date: Wed, 21 Jul 2010 13:14:09 +0000
you mean unpadded fasta, then yes.
Regards
/adnan
> Date: Wed, 21 Jul 2010 14:03:17 +0100
> Subject: [mira_talk] Re: scaffolded contigs
> From: peter@xxxxxxxxxxxxxxxxxxxxx
> To: mira_talk@xxxxxxxxxxxxx
>
> On Wed, Jul 21, 2010 at 1:49 PM, Davide Scaglione <gianza@xxxxxxxxxx> wrote:
> > Fourth!
>
> Wow - I wasn't expecting such interest.
>
> I've just looked at the code and I'm afraid there is a catch: It was
> using Biopython
> with some experimental stuff that isn't in the main release (and may never
> be).
> In order to be useful to you guys, I'd have to re-write it to use the basic
> ACE
> parsing in standard Biopython... but that shouldn't take too long.
>
> What output file format would suit you all? Just the ungapped sequence as
> FASTA?
>
> Peter
>
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