[mira_talk] Re: scaffolded contigs
- From: Peter <peter@xxxxxxxxxxxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 21 Jul 2010 15:22:45 +0100
On Wed, Jul 21, 2010 at 3:00 PM, Laurent MANCHON
<lmanchon@xxxxxxxxxxxxxx> wrote:
> Peter:
>
> File ".//ace2fasta.py", line 84
> new_seq = Seq("".join(coverage_tweak(l,c) for (l,c) in zip(record.seq,
> coverage)),
> ^
> SyntaxError: invalid syntax
You're probably better off using MIRA's convert_project, but anyway...
What version of Python are you on, and what version of Biopython?
I've just tried on an older machine and realised as written it needs
Biopython 1.54. When trying to work out the dependencies I was too
focused on the ACE stuff.
Peter
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