Dear sir, Good morning.. i successfully installed and do a run in mira.. i got this error .. hereby i attached my manifest also. plz kindly suggest the solution -- *Thanks & Regards, * * G.Vishnupriya *
This is MIRA 4.0rc5 .
Please cite: Chevreux, B., Wetter, T. and Suhai, S. (1999), Genome Sequence
Assembly Using Trace Signals and Additional Sequence Information.
Computer Science and Biology: Proceedings of the German Conference on
Bioinformatics (GCB) 99, pp. 45-56.
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Compiled by: bach
Sun Dec 8 14:17:52 CET 2013
On: Linux vk10464 2.6.32-41-generic #94-Ubuntu SMP Fri Jul 6 18:00:34 UTC 2012
x86_64 GNU/Linux
Compiled in boundtracking mode.
Compiled in bugtracking mode.
Compiled with ENABLE64 activated.
Runtime settings (sorry, for debug):
Size of size_t : 8
Size of uint32 : 4
Size of uint32_t: 4
Size of uint64 : 8
Size of uint64_t: 8
Current system: Linux dhcp-192-168-2-168 2.6.21-7.fc7xen #1 SMP Tue Feb 12
12:35:59 EST 2008 x86_64 x86_64 x86_64 GNU/Linux
Fatal error (may be due to problems of the input data or parameters):
********************************************************************************
* In file manifest.conf: line *
* data = result1quality584.fastq *
* has keyword 'data' which is not recognised. *
* The last recognised keyword was 'parameters', is this a continuation line *
* and *
* did you eventually forget the backslash in the line above? *
********************************************************************************
->Thrown: void Manifest::slurpInManifest(stringstream & mfin, const string &
origsource, bool resume))
->Caught: main
Aborting process, probably due to error in the input data or
parametrisation.Please check the output log for more information.
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CWD: /root
Thank you for noticing that this is *NOT* a crash, but a
controlled program stop.
Your system seems to be older or have some quirks with locale settings.
Using the LC_ALL=C workaround.
If you don't want that, fix your system ;-)
Failure, wrapped MIRA process aborted.
Attachment:
manifest.conf
Description: Binary data
