[mira_talk] Re: Bug report
- From: Marshall Hampton <hamptonio@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Tue, 19 Apr 2011 09:36:36 -0500
The actual command I am using is:
mira --projectin=LRP2_mm --projectout=LRP2_mm_I12
--job=denovo,est,accurate,454,solexa 454_SETTINGS -CL:emlc=yes
-CL:mlcr=16 -CL:emrc=yes -CL:mrcr=20 COMMON_SETTINGS -GE:mps=12
This is transcriptome data, so I was using the "est" job setting.
-Marshall
On Tue, Apr 19, 2011 at 8:11 AM, Bastien Chevreux <bach@xxxxxxxxxxxx> wrote:
> On Apr 19, 2011, at 14:35 , Marshall Hampton wrote:
>> I am getting the following error on a lot of little assemblies I am
>> doing right now. They are 454 and solexa combinations. The solexa
>> data might have been preprocessed in a suboptimal way.
>>
>> My input can be found at:
>> http://www.d.umn.edu/~mhampton/LRP2.tar.gz
>> I used mira 3.2.1.15.
>
> Ummm ... strange. I tested with your input like this:
>
> mira --project=LRP2_mm -job=denovo,genome,accurate,solexa,454
>
> and the assembly went through without any problem.
>
> What command line are you using?
>
> B.
>
>
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