[mira_talk] Re: Vector screen
- From: Blanca Postigo Jose Miguel <jblanca@xxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 16 Mar 2011 21:21:42 +0100
Mensaje citado por Tony Travis <a.travis@xxxxxxxxxx>:
> On 16/03/11 12:18, Jose Blanca wrote:
> > El 16/03/11 12:14, Tony Travis escribió:
> >> On 16/03/11 08:31, Jose Blanca wrote:
> >>
> >> Hi, Jose.
> >>
> >> That looks interesting!
> >>
> >> I used to use "cross_match" from the Phed/Phrap pipeline, but recently
> >> decided to start using "ssaha2" instead after reading about other people
> >> using it on the MIRA list. It seems to work quite well, but I'm
> >> interested in trying out your pipeline on our Beowulf cluster here.
> >
> > Right now the parallelization works with condor, I don't know how a
> > Beowulf cluster organizes the job. The parallelization library that we
> > use was created to use other systems by writing a plugin, but that
> > pluging should be written.
>
> Hi, Jose.
>
> We used to use 32-bit openMosix, but are now in the process of changing
> to use 64-bit Kerrighed. We also use [Sun,Oracle] Grid Engine as well.
I used to use openmosix, but it seems like a long time ago. I'm sure that
writting a sun grid pluging for our parallelization infraestructure should be
fairly easy (just modifying the condor plugin).
Regards,
Jose Blanca
> Bye,
>
> Tony.
> --
> Dr. A.J.Travis, University of Aberdeen, Rowett Institute of Nutrition
> and Health, Greenburn Road, Bucksburn, Aberdeen AB21 9SB, Scotland, UK
> tel +44(0)1224 712751, fax +44(0)1224 716687, http://www.rowett.ac.uk
> mailto:a.travis@xxxxxxxxxx, http://bioinformatics.rri.sari.ac.uk
>
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