[mira_talk] Re: Scaffolding MIRA results with BAMBUS: a primer
- From: Brian Forde <bforde@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 15 Oct 2009 16:50:03 +0100
no worries. It was not you who should have spotted it
On Thu, Oct 15, 2009 at 4:36 PM, Dan Bolser <dan.bolser@xxxxxxxxx> wrote:
> 2009/10/15 Brian Forde <bforde@xxxxxxxxx>:
> > ok bambus mates file issue solved by changing Library to library
> > Library threeKB 700 3000 (..............).*
> >
> > I am confuded about one thing. The Genome size returned in babus stats
> file
> > is only 506,316 but the total scaffold size is 2081772 which is closer to
> > the expect genome size.
> >
> > Any ideas why this would be
>
> Could be gaps in the scaffold?
>
> Sorry I didn't spot you're 'typo'!
>
>
> Dan.
>
>
> >
> >
> > On Fri, Oct 9, 2009 at 5:48 PM, Bastien Chevreux <bach@xxxxxxxxxxxx>
> wrote:
> >>
> >> On Freitag 09 Oktober 2009 Dan Bolser wrote:
> >> > [...]
> >> > Again it's off topic, but which version of Bambus are you using?
> >>
> >> It's not that much off topic, is it? As long as it helps people to get a
> >> whole
> >> pipeline (pre-processing, assembly, scaffolding, finishing) running, I'm
> >> all
> >> for it.
> >>
> >> B. :-)
> >>
> >> --
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> >
> >
> >
> > --
> > "If scientists knew what they were doing they wouldn't call it research"
> >
>
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"If scientists knew what they were doing they wouldn't call it research"
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