[mira_talk] Re: Scaffolding MIRA results with BAMBUS: a primer
- From: Dan Bolser <dan.bolser@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 15 Oct 2009 16:36:58 +0100
2009/10/15 Brian Forde <bforde@xxxxxxxxx>:
> ok bambus mates file issue solved by changing Library to library
> Library threeKB 700 3000 (..............).*
>
> I am confuded about one thing. The Genome size returned in babus stats file
> is only 506,316 but the total scaffold size is 2081772 which is closer to
> the expect genome size.
>
> Any ideas why this would be
Could be gaps in the scaffold?
Sorry I didn't spot you're 'typo'!
Dan.
>
>
> On Fri, Oct 9, 2009 at 5:48 PM, Bastien Chevreux <bach@xxxxxxxxxxxx> wrote:
>>
>> On Freitag 09 Oktober 2009 Dan Bolser wrote:
>> > [...]
>> > Again it's off topic, but which version of Bambus are you using?
>>
>> It's not that much off topic, is it? As long as it helps people to get a
>> whole
>> pipeline (pre-processing, assembly, scaffolding, finishing) running, I'm
>> all
>> for it.
>>
>> B. :-)
>>
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>
>
> --
> "If scientists knew what they were doing they wouldn't call it research"
>
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