[mira_talk] Re: Scaffolding MIRA results with BAMBUS: a primer

  • From: Brian Forde <bforde@xxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Thu, 15 Oct 2009 15:02:37 +0100

ok bambus mates file issue solved by changing Library to library
Library threeKB 700     3000    (..............).*

I am confuded about one thing. The Genome size returned in babus stats file
is only 506,316 but the total scaffold size is 2081772 which is closer to
the expect genome size.

Any ideas why this would be


On Fri, Oct 9, 2009 at 5:48 PM, Bastien Chevreux <bach@xxxxxxxxxxxx> wrote:

> On Freitag 09 Oktober 2009 Dan Bolser wrote:
> > [...]
> > Again it's off topic, but which version of Bambus are you using?
>
> It's not that much off topic, is it? As long as it helps people to get a
> whole
> pipeline (pre-processing, assembly, scaffolding, finishing) running, I'm
> all
> for it.
>
> B. :-)
>
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