[mira_talk] Re: Mappging to Reference

Hello Bastien,

I'm having problems with the rail reads.
Can you please explain to me their nature?

I've noticed that a good deal of my sequences have only the rr covering it. eg

ref      aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
read1 aaaaaaaaaa
read2                             aaaaaaaaaaaaaaaaa
rr1                aaaaaaaaaaaaaaa

In this case, i was assuming that the region covered only by RR are
regions without sequencing information. Turns out, more than 80% of my
sequence is like that. Even worse, there are several SNP/GAP/INS/DEL
in those regions, what is a bit strange.

Regards

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