[mira_talk] Re: Mappging to Reference
- From: Saulo Alves <sauloal@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Fri, 23 Jul 2010 13:53:13 +0200
Hello Bastien,
I'm having problems with the rail reads.
Can you please explain to me their nature?
I've noticed that a good deal of my sequences have only the rr covering it. eg
ref aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
read1 aaaaaaaaaa
read2 aaaaaaaaaaaaaaaaa
rr1 aaaaaaaaaaaaaaa
In this case, i was assuming that the region covered only by RR are
regions without sequencing information. Turns out, more than 80% of my
sequence is like that. Even worse, there are several SNP/GAP/INS/DEL
in those regions, what is a bit strange.
Regards
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