[mira_talk] Mappging to Reference

  • From: Saulo Alves <sauloal@xxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Thu, 10 Jun 2010 16:14:27 +0200


I'm facing a problem where I'm trying to map all the "events" on the query
sequence (the new genome) to the reference genome.
The problem is, MIRA inserts several * on the reference prior to assembly
and shift frames (as reported in the AT field in the MAF file).
After all those modification I'm not able to map BACK base-by-base each

I'm planning on creating a "multiple alignment" of the two sequences for
high density annotation.

Can anyone help me?


Other related posts: