[mira_talk] Mappging to Reference

Hello,

I'm facing a problem where I'm trying to map all the "events" on the query
sequence (the new genome) to the reference genome.
The problem is, MIRA inserts several * on the reference prior to assembly
and shift frames (as reported in the AT field in the MAF file).
After all those modification I'm not able to map BACK base-by-base each
problem.

I'm planning on creating a "multiple alignment" of the two sequences for
high density annotation.

Can anyone help me?

Regards

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