[overture] Re: Installing Overture.v24 on Mac OSX Lion
- From: "J. P. Bernstein" <astro@xxxxxxx>
- To: overture@xxxxxxxxxxxxx
- Date: Mon, 5 Mar 2012 16:56:57 -0600
That must be it.
Kyle, the output says it wrote the file. I just did a reconfig, and the file
was there. Indeed, I did not make clean before.
Best,
Joe
On Mar 5, 2012, at 4:52 PM, Erik Wilson wrote:
>
> If I remember correctly a "make clean" removes that file, which has bit me in
> the past.
>
>
> On 03/05/2012 03:46 PM, Kyle K. Chand wrote:
>> Well, that is funny, one of the last things Overture's configure script does
>> (supposed to do!) is write configure.options... There is even a check to
>> make sure it opened correctly.
>> What is the output when you run Overture's configure script? You might want
>> to do this in another build directory so it does not mess up all the
>> dependencies.
>>
>> Kyle
>>
>> mailto: chand1@xxxxxxxx
>> phoneto: (925) 422 7740
>>
>>
>>
>> On Mar 5, 2012, at 2:37 PM, J. P. Bernstein wrote:
>>
>>> Thanks, Kyle.
>>>
>>> That worked. After several fixes for library location issues, make
>>> concluded without errors (is there supposed to be a "success" message)? I
>>> will send an email to the list recounting each step that I had to do to
>>> build Overture on Mac OSX Lion once I am able to run the tests (see below).
>>>
>>> When I tried to run check.p, I got:
>>>
>>> [alcfwl150:local/ztar/Overture.v24] root# ./check.p
>>> unable to open /usr/local/Overture.v24/configure.options. Check your
>>> Overture env variable.
>>> 1 at ./check.p line 30.
>>>
>>> The file in question is, indeed, missing from $Overture. Has it been
>>> superseded, or something?
>>>
>>> Best,
>>>
>>> Joe
>>>
>>> On Mar 5, 2012, at 12:48 PM, Kyle K. Chand wrote:
>>>
>>>> Hi Joe,
>>>>
>>>> I have two fixes for this, one is nice and cryptic. I can't remember what
>>>> exactly is broken about the configure (I thought it was fixed) but the
>>>> configure script think you are using a build of Mesa rather than a
>>>> distribution on the system or Macports (hence the relative directory
>>>> references in the include file). What is your OpenGL set to?
>>>>
>>>> fix 1: Change $Overture/include/OvertureDefines.h so that the OV_USE_MESA
>>>> variable is set to:
>>>> #define OV_USE_MESA 2
>>>> Note you will need to manually change this every time you do a configure
>>>>
>>>> fix 2: Build your own copy of the Mesa libraries somewhere and set your
>>>> OpenGL environment variable accordingly. The nice thing about this fix is
>>>> that you will get offscreen rendering for hardcopies (and no worries upon
>>>> re-running configure).
>>>>
>>>> Regards,
>>>> Kyle
>>>>
>>>> mailto: chand1@xxxxxxxx
>>>> phoneto: (925) 422 7740
>>>>
>>>>
>>>>
>>>> On Mar 5, 2012, at 9:31 AM, J. P. Bernstein wrote:
>>>>
>>>>> Hello Kyle,
>>>>>
>>>>> The command you suggested did not work (see below). I was able to work
>>>>> around the issue by doing "sudo tcsh" to open a root shell and making a
>>>>> symbolic line to the Mesa lib (again, see below).
>>>>>
>>>>> The make ran for some time and then failed with:
>>>>>
>>>>> --------------------
>>>>> osRender.C:215:45: error: GL/../../src/mesa/main/context.h: No such file
>>>>> or directory
>>>>> osRender.C:230: error: 'GLcontext' does not name a type
>>>>> osRender.C:231: error: ISO C++ forbids declaration of 'GLvisual' with no
>>>>> type
>>>>> osRender.C:231: error: expected ';' before '*' token
>>>>> osRender.C:232: error: ISO C++ forbids declaration of 'GLframebuffer'
>>>>> with no type
>>>>> osRender.C:232: error: expected ';' before '*' token
>>>>> osRender.C:241: error: ISO C++ forbids declaration of 'GLchan' with no
>>>>> type
>>>>> osRender.C:241: error: expected ';' before '*' token
>>>>> osRender.C: In member function 'int
>>>>> GL_GraphicsInterface::offScreenRenderMesa(const char*,
>>>>> GraphicsParameters&)':
>>>>> osRender.C:299: error: 'GLcontext' was not declared in this scope
>>>>> osRender.C:299: error: 'CC' was not declared in this scope
>>>>> osRender.C:299: error: expected primary-expression before ')' token
>>>>> osRender.C:299: error: expected `;' before 'OSMesaGetCurrentContext'
>>>>> osRender.C:313: error: 'oldCC' was not declared in this scope
>>>>> osRender.C:313: error: expected primary-expression before ')' token
>>>>> osRender.C:313: error: 'struct osmesa_context' has no member named
>>>>> 'gl_ctx'
>>>>> osRender.C:314: error: 'struct osmesa_context' has no member named
>>>>> 'gl_ctx'
>>>>> osRender.C:314: error: expected primary-expression before ')' token
>>>>> osRender.C:314: error: expected `;' before 'CC'
>>>>> osRender.C:322: error: expected primary-expression before ')' token
>>>>> osRender.C:322: error: 'struct osmesa_context' has no member named
>>>>> 'gl_ctx'
>>>>> osRender.C:322: error: '_mesa_copy_context' was not declared in this scope
>>>>> osRender.C:359: error: 'struct osmesa_context' has no member named
>>>>> 'gl_ctx'
>>>>> osRender.C:359: error: expected primary-expression before ')' token
>>>>> osRender.C:359: error: expected `)' before 'oldCC'
>>>>> make[1]: *** [osRender.o] Error 1
>>>>> make: *** [all] Error 2
>>>>> --------------------
>>>>>
>>>>> Any thoughts?
>>>>>
>>>>> Best,
>>>>>
>>>>> Joe
>>>>>
>>>>>
>>>>> ++++++++++sudo and source issue++++++++++
>>>>> sudo "source defenv; ./configure darwin useHDF5 FC=gfortran"
>>>>>
>>>>> resulted in:
>>>>>
>>>>> --------------------
>>>>> usage: sudo -h | -K | -k | -L | -V
>>>>> usage: sudo -v [-AknS] [-g groupname|#gid] [-p prompt] [-u user name|#uid]
>>>>> usage: sudo -l[l] [-AknS] [-g groupname|#gid] [-p prompt] [-U user name]
>>>>> [-u user
>>>>> name|#uid] [-g groupname|#gid] [command]
>>>>> usage: sudo [-AbEHknPS] [-C fd] [-g groupname|#gid] [-p prompt] [-u user
>>>>> name|#uid]
>>>>> [-g groupname|#gid] [VAR=value] [-i|-s] [<command>]
>>>>> usage: sudo -e [-AknS] [-C fd] [-g groupname|#gid] [-p prompt] [-u user
>>>>> name|#uid]
>>>>> file ...
>>>>> --------------------
>>>>>
>>>>> So I tried this:
>>>>>
>>>>> --------------------
>>>>> alcfwl150:Overture.v24 jpbernst$ sudo source defenv; sudo ./configure
>>>>> darwin useHDF5 FC=gfortran
>>>>> Password:
>>>>> sudo: source: command not found
>>>>> *** configure for machine = darwin ****
>>>>> *** machineType = [x86_64] ****
>>>>> First checking for proper definition of Overture environmental variables:
>>>>> ERROR: environmental variable APlusPlus = DOES NOT EXIST
>>>>> ERROR: environmental variable OpenGL = DOES NOT EXIST
>>>>> ERROR: environmental variable HDF = DOES NOT EXIST
>>>>> ERROR: environmental variable Overture = DOES NOT EXIST
>>>>> ERROR: environmental variable XLIBS = DOES NOT EXIST
>>>>> ERROR: Unable to find OpenGL library libGL or libMesaGL in /lib64
>>>>> Check the OpenGL environmental variable and try again
>>>>> INFO: I am going to copy my version of the GLw files into Overture/static
>>>>> directory
>>>>> Checking for the Motif header files in /include/Xm/
>>>>> Unable to find the Motif or Lesstif file /include/Xm/Xm.h
>>>>> Check your MOTIF environmental variable, MOTIF=[]. It seems to be
>>>>> incorrect.
>>>>> --------------------
>>>>>
>>>>> I then tried the following, which worked, as far as the env vars are
>>>>> concerned, but uncovered a Mesa location issue:
>>>>>
>>>>> --------------------
>>>>> alcfwl150:Overture.v24 jpbernst$ sudo tcsh
>>>>> [alcfwl150:/usr/local/Overture.v24] root# source defenv
>>>>> [alcfwl150:/usr/local/Overture.v24] root# ./configure darwin useHDF5
>>>>> FC=gfortran
>>>>> *** configure for machine = darwin ****
>>>>> *** machineType = [x86_64] ****
>>>>> First checking for proper definition of Overture environmental variables:
>>>>> APlusPlus = /usr/local/A++P++-0.8.0/A++/install
>>>>> OpenGL = /opt/local
>>>>> HDF = /opt/local
>>>>> Overture = /usr/local/Overture.v24
>>>>> XLIBS = /opt/local
>>>>> ERROR: Unable to find OpenGL library libGL or libMesaGL in
>>>>> /opt/local/lib64
>>>>> --------------------
>>>>>
>>>>> I devised the following fix:
>>>>>
>>>>> --------------------
>>>>> [alcfwl150:/usr/local/Overture.v24] root# mkdir /opt/local/lib64
>>>>> [alcfwl150:/usr/local/Overture.v24] root# ln -s
>>>>> /opt/local/lib/libOSMesa.7.dylib /opt/local/lib64/libMesaGL.dylib
>>>>> [alcfwl150:/usr/local/Overture.v24] root# ./configure darwin useHDF5
>>>>> FC=gfortran *** configure for machine = darwin ****
>>>>> *** machineType = [x86_64] ****
>>>>> First checking for proper definition of Overture environmental variables:
>>>>> APlusPlus = /usr/local/A++P++-0.8.0/A++/install
>>>>> OpenGL = /opt/local
>>>>> HDF = /opt/local
>>>>> Overture = /usr/local/Overture.v24
>>>>> XLIBS = /opt/local
>>>>> Using Mesa `OpenGL' libraries since libMesaGL found in /opt/local/lib64
>>>>> Mesa has GLwDrawA.h in the include dir
>>>>> INFO: I am going to copy my version of the GLw files into Overture/static
>>>>> directory
>>>>> Checking for the Motif header files in /opt/local/include/Xm/
>>>>> Using motif.
>>>>> perlloc = [/opt/local/lib/perl5/5.12.3/darwin-multi-2level/CORE]
>>>>> Using perl headers and lib from
>>>>> perllibs=[/opt/local/lib/perl5/5.12.3/darwin-multi-2level/CORE]
>>>>> Will link to the libraries perllibs=[-lperl -ldl -lm -lutil -lc]
>>>>> Using configuration file config/MakeDefs.darwin
>>>>> Using hdf 5
>>>>> Using Compilers: C++=g++, C=gcc, Fortran=gfortran (base version: C++=g++,
>>>>> C=gcc, Fortran=gfortran)
>>>>> Using g++ version g++ (GCC) 4.3.6
>>>>> gcc lib directory = /opt/local/lib64
>>>>> **Overture will be compiled in double precision
>>>>> debugging turned on, using debugFlag=-g.
>>>>> Checking for bool support
>>>>> bool is supported.
>>>>> Checking for exceptions support
>>>>> exceptions are supported.
>>>>> Checking for STL availability. $STLINC=
>>>>> stl is available using std include format
>>>>> the compiler understands namespaces
>>>>>
>>>>> the compiler understands default template arguments
>>>>>
>>>>> the compiler understands explicit
>>>>> Create the Makefile for directory: mapUtil
>>>>> Create the Makefile for directory: phoneyFiles
>>>>> Create the Makefile for directory: Cad
>>>>> Create the Makefile for directory: DataBase
>>>>> Create the Makefile for directory: Grid
>>>>> Create the Makefile for directory: GridFunction
>>>>> Create the Makefile for directory: GridGenerator
>>>>> Create the Makefile for directory: Mapping
>>>>> Create the Makefile for directory: Oges
>>>>> Create the Makefile for directory: Ogshow
>>>>> Create the Makefile for directory: otherStuff
>>>>> Create the Makefile for directory: bin
>>>>> Create the Makefile for directory: boxlib
>>>>> Create the Makefile for directory: lib
>>>>> Create the Makefile for directory: primer
>>>>> Create the Makefile for directory: sampleGrids
>>>>> Create the Makefile for directory: static
>>>>> Create the Makefile for directory: templates
>>>>> Create the Makefile for directory: examples
>>>>> Create the Makefile for directory: Ogmg
>>>>> Create the Makefile for directory: tests
>>>>>
>>>>> configuration options written to file configure.options
>>>>>
>>>>> Make options saved to file make.options.
>>>>>
>>>>> Build the Makefile in the main directory
>>>>> done configuration.
>>>>>
>>>>> ****************************************************************************************************
>>>>>
>>>>> WARNING: Environment variable LANG=en_US.UTF-8 -- Overture may not work
>>>>> with this language.
>>>>> European languages may reverse the meaning of `.' and ',' in numbers
>>>>> such a 3,14 or 3.14
>>>>> and then Overture will not parse command files properly.
>>>>> Type `locale' to see your language settings. You may need to change
>>>>> to the language `en_US'
>>>>> ****************************************************************************************************
>>>>>
>>>>> type `make' to build Overture (or 'make -j2' for a parallel make with 2
>>>>> processes).
>>>>> type `make rapsodi' to build the Rapsodi libraries and rap.
>>>>> --------------------
>>>>>
>>>>> On Mar 2, 2012, at 5:02 PM, Kyle K. Chand wrote:
>>>>>
>>>>>> Joe,
>>>>>>
>>>>>> The sudo might be breaking it as it probably starts a new shell. You
>>>>>> can try this:
>>>>>> sudo "source defenv; ./configure darwin useHDF5 FC=gfortran"
>>>>>> Note that you will then have to do
>>>>>> sudo "source defenv; make"
>>>>>> to actually build it, assuming this works. This will not work if the
>>>>>> default shell for root is something other than csh. For example, if it
>>>>>> is bash then you will need to
>>>>>> write a bash version of defenv that you can execute in the sudo command.
>>>>>>
>>>>>> Or login as root and do the install if you need it to have root
>>>>>> ownership.
>>>>>>
>>>>>> regards,
>>>>>> Kyle
>>>>>>
>>>>>> mailto: chand1@xxxxxxxx
>>>>>> phoneto: (925) 422 7740
>>>>>>
>>>>>>
>>>>>>
>>>>>> On Mar 2, 2012, at 2:28 PM, J. P. Bernstein wrote:
>>>>>>
>>>>>>> Thanks, Kyle. That worked with:
>>>>>>>
>>>>>>> sudo ./configure --with-CC="/opt/local/bin/gcc -I/usr/include/malloc"
>>>>>>> --with-CXX="/opt/local/bin/g++ -I/usr/include/malloc" --prefix=`pwd`
>>>>>>>
>>>>>>> Moving on to the next step, the enviers set in defenv are not being
>>>>>>> inherited when trying to build Overture. I have the following set:
>>>>>>>
>>>>>>> % cat defenv
>>>>>>> #! /bin/csh -f
>>>>>>> #
>>>>>>> # Define environment variables for Overture
>>>>>>> #
>>>>>>> # see the install notes on the web for further explanation or
>>>>>>> Overture/doc/install.tex
>>>>>>> #
>>>>>>> # edit this file and change as appropriate for your system,
>>>>>>> # then type 'source defenv'
>>>>>>>
>>>>>>> # You will need to change the following:
>>>>>>> setenv XLIBS /opt/local
>>>>>>> setenv MOTIF /opt/local
>>>>>>> setenv OpenGL /opt/local
>>>>>>> setenv HDF /opt/local
>>>>>>> setenv APlusPlus /usr/local/A++P++-0.8.0/A++/install
>>>>>>> setenv Overture /usr/local/Overture.v24
>>>>>>>
>>>>>>>
>>>>>>> but get:
>>>>>>>
>>>>>>> % sudo ./configure darwin useHDF5 FC=gfortran
>>>>>>> Password:
>>>>>>> *** configure for machine = darwin ****
>>>>>>> *** machineType = [x86_64] ****
>>>>>>> First checking for proper definition of Overture environmental
>>>>>>> variables:
>>>>>>> ERROR: environmental variable APlusPlus = DOES NOT EXIST
>>>>>>> ERROR: environmental variable OpenGL = DOES NOT EXIST
>>>>>>> ERROR: environmental variable HDF = DOES NOT EXIST
>>>>>>> ERROR: environmental variable Overture = DOES NOT EXIST
>>>>>>> ERROR: environmental variable XLIBS = DOES NOT EXIST
>>>>>>> ERROR: Unable to find OpenGL library libGL or libMesaGL in /lib64
>>>>>>> Check the OpenGL environmental variable and try again
>>>>>>> INFO: I am going to copy my version of the GLw files into
>>>>>>> Overture/static directory
>>>>>>> Checking for the Motif header files in /include/Xm/
>>>>>>> Unable to find the Motif or Lesstif file /include/Xm/Xm.h
>>>>>>> Check your MOTIF environmental variable, MOTIF=[]. It seems to be
>>>>>>> incorrect.
>>>>>>>
>>>>>>> Any thoughts?
>>>>>>>
>>>>>>> Sorry for the basic questions; while I am very experienced with linux,
>>>>>>> I am rather new to mac.
>>>>>>>
>>>>>>> Best,
>>>>>>>
>>>>>>> Joe
>>>>>>>
>>>>>>>
>>>>>>> On Mar 1, 2012, at 4:52 PM, Kyle K. Chand wrote:
>>>>>>>
>>>>>>>> Joe,
>>>>>>>>
>>>>>>>> Below are some more recent instructions for a parallel build of
>>>>>>>> Overture on a Mac, including an A++P++ configure line which does not
>>>>>>>> include -mlongcall (that was for older PowerPC macs, I believe).
>>>>>>>> For a serial build, the A++ configure line I currently use (on a OS X
>>>>>>>> 10.5.8 machine) is:
>>>>>>>> % ./configure --with-CC="/Users/chand1/MacPorts/bin/gcc
>>>>>>>> -I/usr/include/malloc" --with-CXX="/Users/chand1/MacPorts/bin/g++
>>>>>>>> -I/usr/include/malloc"
>>>>>>>> --prefix="/Users/chand1/Overture/A++P++/A++P++-0.7.9d/gcc4.3.3"
>>>>>>>> Note, my MacPorts is not installed in /opt/local, you will need to
>>>>>>>> adjust the configure line appropriately.
>>>>>>>>
>>>>>>>> For Overture, one would use
>>>>>>>> % configure darwin useHDF5 FC=gfortran
>>>>>>>> or something similar.
>>>>>>>>
>>>>>>>> Regards,
>>>>>>>> Kyle
>>>>>>>>
>>>>>>>>
>>>>>>>> mailto: chand1@xxxxxxxx
>>>>>>>> phoneto: (925) 422 7740
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> Begin forwarded message:
>>>>>>>>
>>>>>>>>> From: Kyle K.Chand <chand1@xxxxxxxx>
>>>>>>>>> Date: September 24, 2010 3:44:20 PM PDT
>>>>>>>>> To: Ramesh Balakrishnan <bramesh@xxxxxxxxxxxx>
>>>>>>>>> Cc: "overture@xxxxxxxxxxxxx" <overture@xxxxxxxxxxxxx>
>>>>>>>>> Subject: [overture] Parallel Overture on Mac
>>>>>>>>> Reply-To: "overture@xxxxxxxxxxxxx" <overture@xxxxxxxxxxxxx>
>>>>>>>>>
>>>>>>>>> Hi Ramesh,
>>>>>>>>>
>>>>>>>>> I managed to build Overture on the Mac. There were a few odd things.
>>>>>>>>>
>>>>>>>>> 0) It appears that openmpi is on the mac by default in /usr, I had not
>>>>>>>>> known that.
>>>>>>>>> You can also use the openmpi and mpich or lam mpi from macports.
>>>>>>>>>
>>>>>>>>> 1) the configure line for A++P++ is:
>>>>>>>>>
>>>>>>>>> ./configure --prefix=`pwd` --without-PADRE --disable-shared --disable-
>>>>>>>>> mpirun-check --enable-PXX --with-CC="gcc -I/usr/include/malloc"
>>>>>>>>> --with-
>>>>>>>>> CXX="g++ -I/usr/include/malloc" --with-mpi-libs="-lmpi_cxx -lmpi"
>>>>>>>>>
>>>>>>>>> 2) To build A++P++, use :
>>>>>>>>> make MAKE=make install
>>>>>>>>>
>>>>>>>>> 3) make sure you have a parallel build of HDF5
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> 4) configure Overture using something like:
>>>>>>>>> ./configure darwin parallel useHDF5 FC=gfortran
>>>>>>>>>
>>>>>>>>> 5) Now you need to fix the PFLAGS variable in $Overture/GridFunction/
>>>>>>>>> Makefile in order to add -I/usr/include/malloc
>>>>>>>>>
>>>>>>>>> 6) In the primer directory Makefile, eliminate the -Wl-weak-
>>>>>>>>> framework,VecLib option from all the make variables
>>>>>>>>>
>>>>>>>>> 7) Fix ParallelUtility.C, the bool version of broadCast should be:
>>>>>>>>> void
>>>>>>>>> broadCast( bool & value, const int & fromProcessor )
>>>>>>>>> {
>>>>>>>>> #ifdef USE_PPP
>>>>>>>>> if( Communication_Manager::Number_Of_Processors==0 )
>>>>>>>>> return;
>>>>>>>>>
>>>>>>>>> int tmpValue = value;
>>>>>>>>> MPI_Bcast( &tmpValue, 1, MPI_INT, fromProcessor, MPI_COMM_WORLD);
>>>>>>>>> value = tmpValue;
>>>>>>>>>
>>>>>>>>> #endif
>>>>>>>>> }
>>>>>>>>>
>>>>>>>>> 8) Now you should be able to build Overture and also build the
>>>>>>>>> examples primer/pppWave and primer/pwave
>>>>>>>>>
>>>>>>>>> I was able to build and run pppWave and pwave with two MPI tasks on my
>>>>>>>>> mac laptop. We are working the fixes
>>>>>>>>> into the next release.
>>>>>>>>>
>>>>>>>>> Let me know how this works!
>>>>>>>>> Kyle
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> mailto: chand1@xxxxxxxx
>>>>>>>>> phoneto: (925) 422 7740
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>
>>>
>>
>>
>
>
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