[mira_talk] Re: duplicate read names not allowed ?

  • From: Laurent MANCHON <lmanchon@xxxxxxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Mon, 17 Sep 2012 22:29:58 +0200

Le 17/09/2012 22:06, Bastien Chevreux a écrit :

On Sep 17, 2012, at 20:57 , Laurent MANCHON wrote:

I suspect your files do not adhere to the above :-)

you are right, this is what i have:
[...]
it seems to be a Casava 1.8 format but pair member is missing
Well, renaming the reads to have /1 and /2 will do the trick. a sed one-line should be able to take care of that.
yes, adding /1 or / 2 at the end of each header that should be enough, isn't it ? 



B.

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