Thank you, Bastien, for clarifying this out. I am new to mira and because "-fasta -caf" worked well from the beginning I have never touched this part of the command line again. Now it runs ok.
thank you again and best regards, Andrzej Bastien Chevreux wrote:
Hmmm ... "-fasta -caf" shouldn't have worked like it did (it should set all input files to caf as this comes last), I fixed that oversight.You need to write: "... SANGER_SETTINGS -LR:ft=caf ..." to change loading of Sanger data to caf (no need to change 454 settinges, fasta is default there).Regards, Bastien
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