[mira_talk] Re: MIRA 3 release candidate 1
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 29 Jul 2009 08:55:08 +0200
On Mittwoch 29 Juli 2009 Andrzej Migdalski wrote:
> i ran mira with: -fasta -caf -project=kp15
> -job=denovo,genome,454,sanger,accurate -SK:not=4 454_SETTINGS -ED:ace=yes
> SANGER_SETTINGS -LR:mxti=no -AS:mrl=100 -noclipping
New version 3rc1b which fixess an internal bug for mixed loading of file types.
Hmmm ... "-fasta -caf" shouldn't have worked like it did (it should set all
input files to caf as this comes last), I fixed that oversight.
You need to write: "... SANGER_SETTINGS -LR:ft=caf ..." to change loading of
Sanger data to caf (no need to change 454 settinges, fasta is default there).
Regards,
Bastien
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