[mira_talk] Re: MIRA 3 release candidate 1
- From: Andrzej Migdalski <andy@xxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 29 Jul 2009 01:34:37 +0200
hmm, now i've got:
Fatal Error: "While trying to load sequence data: type 'fasta' is unknown
(is there a typo?)"
->Thrown: void Assembly::loadSequenceData()
->Caught: main
i ran mira with: -fasta -caf -project=kp15
-job=denovo,genome,454,sanger,accurate -SK:not=4 454_SETTINGS -ED:ace=yes
SANGER_SETTINGS -LR:mxti=no -AS:mrl=100 -noclipping
Looks like "-caf" makes problem here, runs ok without it and with dummy fasta file.
Did i make a mistake somewhere? It still works with 2.46, though.
best regards,
Andrzej
ps.
Bastien Chevreux wrote:
Hello Andrzej,
yikes, shame on me. I optimised some data allocation in the CAF loading
routines and tested them thoroughly ... but only in "convert_project", not
"mira".
I've put a bugfixed version on the download page (3rc1a) which fixes the bug.
Thanks for reporting it.
Regards,
Bastien
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