[mira_talk] 0.5TB not enough space?
- From: Iddo Friedberg <idoerg@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 15 Aug 2011 12:41:15 -0400
Hi,
I have 9582196 mate-paired Solexa seqeunces, 100bp long. The genome I am
assembling is somewhere between 700KB and 1.5MB (Mycoplasma).
Anyhow, It seems like I rant out of my 500GB local space for the log files.
Is that reasonable? I can increase local scratch space, I just want to make
sure that I am not doing something wrong. Seems like quite a bit of space
to be used for such an assembly.
Parameters I used:
--project=CCGTCC COMMON_SETTINGS -DI:trt=/localscratch/friedbi/mira_logs
--job=denovo,genome,accurate,solexa SOLEXA_SETTINGS
-GE:tismin=150:tismax=350
The entire logfile is available here, if someone is interested in more
information: http://db.tt/6VxJ8sW
Thanks in advance for any help!
Iddo
--
Iddo Friedberg
http://iddo-friedberg.net/contact.html
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