[mira_talk] Re: 0.5TB not enough space?
- From: Evan <evan@xxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 15 Aug 2011 09:46:16 -0700
Yes that sounds about right..
On Mon, Aug 15, 2011 at 9:41 AM, Iddo Friedberg <idoerg@xxxxxxxxx> wrote:
> Hi,
>
> I have 9582196 mate-paired Solexa seqeunces, 100bp long. The genome I am
> assembling is somewhere between 700KB and 1.5MB (Mycoplasma).
>
> Anyhow, It seems like I rant out of my 500GB local space for the log files.
> Is that reasonable? I can increase local scratch space, I just want to make
> sure that I am not doing something wrong. Seems like quite a bit of space
> to be used for such an assembly.
>
> Parameters I used:
>
> --project=CCGTCC COMMON_SETTINGS -DI:trt=/localscratch/friedbi/mira_logs
> --job=denovo,genome,accurate,solexa SOLEXA_SETTINGS
> -GE:tismin=150:tismax=350
>
> The entire logfile is available here, if someone is interested in more
> information: http://db.tt/6VxJ8sW
>
> Thanks in advance for any help!
>
> Iddo
>
>
> --
> Iddo Friedberg
> http://iddo-friedberg.net/contact.html
>
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