Dear sir, Good morning.. i successfully installed and do a run in mira.. i got this error .. hereby i attached my manifest also. plz kindly suggest the solution -- *Thanks & Regards, * * G.Vishnupriya *
This is MIRA 4.0rc5 . Please cite: Chevreux, B., Wetter, T. and Suhai, S. (1999), Genome Sequence Assembly Using Trace Signals and Additional Sequence Information. Computer Science and Biology: Proceedings of the German Conference on Bioinformatics (GCB) 99, pp. 45-56. To (un-)subscribe the MIRA mailing lists, see: http://www.chevreux.org/mira_mailinglists.html After subscribing, mail general questions to the MIRA talk mailing list: mira_talk@xxxxxxxxxxxxx To report bugs or ask for features, please use the SourceForge ticketing system at: http://sourceforge.net/p/mira-assembler/tickets/ This ensures that requests do not get lost. Compiled by: bach Sun Dec 8 14:17:52 CET 2013 On: Linux vk10464 2.6.32-41-generic #94-Ubuntu SMP Fri Jul 6 18:00:34 UTC 2012 x86_64 GNU/Linux Compiled in boundtracking mode. Compiled in bugtracking mode. Compiled with ENABLE64 activated. Runtime settings (sorry, for debug): Size of size_t : 8 Size of uint32 : 4 Size of uint32_t: 4 Size of uint64 : 8 Size of uint64_t: 8 Current system: Linux dhcp-192-168-2-168 2.6.21-7.fc7xen #1 SMP Tue Feb 12 12:35:59 EST 2008 x86_64 x86_64 x86_64 GNU/Linux Fatal error (may be due to problems of the input data or parameters): ******************************************************************************** * In file manifest.conf: line * * data = result1quality584.fastq * * has keyword 'data' which is not recognised. * * The last recognised keyword was 'parameters', is this a continuation line * * and * * did you eventually forget the backslash in the line above? * ******************************************************************************** ->Thrown: void Manifest::slurpInManifest(stringstream & mfin, const string & origsource, bool resume)) ->Caught: main Aborting process, probably due to error in the input data or parametrisation.Please check the output log for more information. For help, please write a mail to the mira talk mailing list. Subscribing / unsubscribing to mira talk, see: //www.freelists.org/list/mira_talk CWD: /root Thank you for noticing that this is *NOT* a crash, but a controlled program stop. Your system seems to be older or have some quirks with locale settings. Using the LC_ALL=C workaround. If you don't want that, fix your system ;-) Failure, wrapped MIRA process aborted.
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