[mira_talk] Re: Which kind of qulity score does MIRA accept for Solexa fastq?
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 18 Mar 2010 21:53:12 +0100
On Donnerstag 18 März 2010 Peter wrote:
> On Thu, Mar 18, 2010 at 7:05 PM, Bastien Chevreux <bach@xxxxxxxxxxxx> wrote:
> > MIRA will guess right most of the time which format it sees. But you can
> > force it to use a given offset with -LR:fqqo
>
> Does it care about PHRED (min zero) versus the old Solexa scores
> (which went down to -5)?
Yes, but only when loaded as FASTA quality ... long story.
But I won't fix this quirk for FASTQ anymore as Illumina dropped the negative
values (fortunately).
Regards,
Bastien
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