[mira_talk] Re: Which kind of qulity score does MIRA accept for Solexa fastq?
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 18 Mar 2010 20:05:06 +0100
On Donnerstag 18 März 2010 Cheng-Ruei Lee wrote:
> As far as I know, there are three types of fastq files, all with
> different quality score, as described here:
> http://nar.oxfordjournals.org/cgi/content/abstract/gkp1137
> I know that the fastq file I have now is of the fastq-illumina
> format, and I am able to transform it to fastq-sanger or fastq-solexa.
> I am just wondering which type of fastq file MIRA accepts, and which
> parameter to tune for that?
MIRA will guess right most of the time which format it sees. But you can force
it to use a given offset with -LR:fqqo
Regards,
Bastien
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