[mira_talk] Re: MIRA: I am doing it wrong.
- From: Alessandro Riccombeni <rikkomba@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 23 Dec 2009 15:25:52 +0000
OK, I definitely got a better result this time!
I passed from 11K to 2640. Now I can do an hybrid assembly with the SAnger
reads, I guess. Question: I only have the fasta sequences and the quality
files, calculated with CodonAligner(Phred). How do I create a traceinfo
file? Do I have to do it manually?
Thanks for your help,
Alessandro R.
Length assessment:
------------------
Number of contigs: 2640
Total consensus: 12755203
Largest contig: 50164
N50 contig size: 8242
N90 contig size: 2225
N95 contig size: 1453
Coverage assessment:
--------------------
Max coverage (total): 413
Max coverage
Sanger: 0
454: 445
Solexa: 0
Solid: 0
Avg. total coverage (size >= 5000): 10.10
On Wed, Dec 23, 2009 at 12:10 AM, Bastien Chevreux <bach@xxxxxxxxxxxx>wrote:
> On Dienstag 22 Dezember 2009 Alessandro Riccombeni wrote:
> > I have sff_extract 0.2.6
>
> Well, you should definitively try
>
> http://www.chevreux.org/tmp/mira_3rdparty_10-12-2009.tar.bz2
>
> B.
>
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