[mira_talk] Re: GAP4 edition!!
- From: Sharmista Saha <sharmistasaha@xxxxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 3 Dec 2009 19:02:01 +0530
Okays,
but do you think that the assembly created via MIRA at the first go , must
need a post mapping process with gap4 database or it can be overlooked. On
what condition can that be overlooked, if you can mention.
Kind Regards,
Sharmistha
On Thu, Dec 3, 2009 at 1:57 AM, Bastien Chevreux <bach@xxxxxxxxxxxx> wrote:
> On Mittwoch 02 Dezember 2009 Sharmista Saha wrote:
> > The log file says there are errors in mapping, say 2, 3, 4, but assembly
> > process is completed.
> > I do have the caf file as an output.
>
> Perfect. With that you can create about any other output you need:
> - with caf2gap (Sanger Centre): a gap4 database
> - with convert_project (MIRA package): ACE, TEXT, HTML, MAF etc.pp
>
> Regards,
> Bastien
>
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--
Sharmistha Saha,
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