[mira_talk] suggestion to trim contaminants before assembly process
- From: Laurent MANCHON <lmanchon@xxxxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 03 Dec 2009 14:53:42 +0100
--Hi
Just a message for MIRA community:
i have tested a sofware to trim vectors or others contaminants before
use of MIRA,
until now I was in the habit of using SeqClean or cross_match to remove
contaminants from sequences,
but i have pointed that those programs have some drawbacks and weaknesses.
Recently, i have used SeqTrim
software(http://www.scbi.uma.es/cgi-bin/seqtrim/seqtrim_login.cgi), it's
more reliable and accurate,
but it's a bit slower than SeqClean because there is no option to run in
multi-thread, the developers work on a new version to add multi-thread
feature.
Have fun to test it,
Laurent --
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