[mira_talk] Re: suggestion to trim contaminants before assembly process
- From: Tony Travis <a.travis@xxxxxxxxxx>
- To: "mira_talk@xxxxxxxxxxxxx" <mira_talk@xxxxxxxxxxxxx>
- Date: Thu, 03 Dec 2009 14:29:40 +0000
Laurent MANCHON wrote:
--Hi
Just a message for MIRA community:
i have tested a sofware to trim vectors or others contaminants before
use of MIRA,
until now I was in the habit of using SeqClean or cross_match to remove
contaminants from sequences,
but i have pointed that those programs have some drawbacks and weaknesses.
Recently, i have used SeqTrim
software(http://www.scbi.uma.es/cgi-bin/seqtrim/seqtrim_login.cgi), it's
more reliable and accurate,
but it's a bit slower than SeqClean because there is no option to run in
multi-thread, the developers work on a new version to add multi-thread
feature.
Hello, Laurent.
Thanks for posting this: I've just had a look - How does it compare with
"Lucy"?
Bye,
Tony.
--
Dr. A.J.Travis, University of Aberdeen, Rowett Institute of Nutrition
and Health, Greenburn Road, Bucksburn, Aberdeen AB21 9SB, Scotland, UK
tel +44(0)1224 712751, fax +44(0)1224 716687, http://www.rowett.ac.uk
mailto:a.travis@xxxxxxxxxx, http://bioinformatics.rri.sari.ac.uk/~ajt
--
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