Tony Travis a écrit :
Laurent MANCHON wrote:--Hi Just a message for MIRA community: i have tested a sofware to trim vectors or others contaminants before use of MIRA, until now I was in the habit of using SeqClean or cross_match to remove contaminants from sequences,but i have pointed that those programs have some drawbacks and weaknesses.Recently, i have used SeqTrim software(http://www.scbi.uma.es/cgi-bin/seqtrim/seqtrim_login.cgi), it's more reliable and accurate, but it's a bit slower than SeqClean because there is no option to run in multi-thread, the developers work on a new version to add multi-thread feature.Hello, Laurent.Thanks for posting this: I've just had a look - How does it compare with "Lucy"?Bye, Tony.
Lucy is a good tool but not easy to configure and you need to make several tests changing each time parameters to obtain good results, the major advantage of SeqTrim is the facility to configure and the connectivity with others processing tools particularly with RepeatMaskers. For more documentation and to compare with other tools i would suggest to read paper here: http://www.springerlink.com/content/r03453727548t69h/
have fun, Laurent -- -- You have received this mail because you are subscribed to the mira_talk mailing list. For information on how to subscribe or unsubscribe, please visit http://www.chevreux.org/mira_mailinglists.html
