[mira_talk] Re: GAP4 edition!!
- From: Sharmista Saha <sharmistasaha@xxxxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 7 Dec 2009 15:05:54 +0530
Just one quick query,
can MIRA be ran against any other reference data other than a gbk ref. I
mean if I have a reference generated by myself merging two three references
from a plant genome site? will that also work with MIRA to generate a
consensus?
Kind Regards,
Sharmistha
On Sat, Dec 5, 2009 at 7:19 PM, Sven Klages <sir.svencelot@xxxxxxxxxxxxxx>wrote:
> 2009/12/5 Andrzej N <andrzej.k.n@xxxxxxxxx>
>
> One question about GAP4 editing...I did some joining of contigs and now I
>> would like to "save" my work. Can I just close program and reopen it again
>> and start from that point? I can't find any "save option". I'm working on
>> dot plot windows right now...
>>
>> Sorry for another simple question but I can't find any "save file"...
>>
>
> You will always be asked to save your contigs if you have made some changes
> in the contig editor.
> If there is no (unsaved) contig editor open, then there is no need to save
> because it is already saved :-)
> You can safely exit gap4 (via File/exit).
>
> cheers,
> Sven
>
>
>
>>
>> Andrzej
>>
>>
>> On Fri, Dec 4, 2009 at 2:06 PM, Bastien Chevreux <bach@xxxxxxxxxxxx>wrote:
>>
>>> On Freitag 04 Dezember 2009 Sharmista Saha wrote:
>>> > I mean
>>> > "Post-processing mapping assemblies" if you look at solexa manual of
>>> > MIRA.hope you get me right?Kind Regards,
>>>
>>> This is up to you to decide. I would, to get the last little problems
>>> solved.
>>> Just as example for you: with some 30 minutes manual curation for a 4 MB
>>> bacterium, my error rate in an internal test has been 0 errors in 16
>>> megabases
>>> and only 2 "dubious" SNPs (which turned out not to be SNPs).
>>>
>>> Regards,
>>> Bastien
>>>
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>>
>>
>
--
Sharmistha Saha,
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