Just one quick query, can MIRA be ran against any other reference data other than a gbk ref. I mean if I have a reference generated by myself merging two three references from a plant genome site? will that also work with MIRA to generate a consensus? Kind Regards, Sharmistha On Sat, Dec 5, 2009 at 7:19 PM, Sven Klages <sir.svencelot@xxxxxxxxxxxxxx>wrote: > 2009/12/5 Andrzej N <andrzej.k.n@xxxxxxxxx> > > One question about GAP4 editing...I did some joining of contigs and now I >> would like to "save" my work. Can I just close program and reopen it again >> and start from that point? I can't find any "save option". I'm working on >> dot plot windows right now... >> >> Sorry for another simple question but I can't find any "save file"... >> > > You will always be asked to save your contigs if you have made some changes > in the contig editor. > If there is no (unsaved) contig editor open, then there is no need to save > because it is already saved :-) > You can safely exit gap4 (via File/exit). > > cheers, > Sven > > > >> >> Andrzej >> >> >> On Fri, Dec 4, 2009 at 2:06 PM, Bastien Chevreux <bach@xxxxxxxxxxxx>wrote: >> >>> On Freitag 04 Dezember 2009 Sharmista Saha wrote: >>> > I mean >>> > "Post-processing mapping assemblies" if you look at solexa manual of >>> > MIRA.hope you get me right?Kind Regards, >>> >>> This is up to you to decide. I would, to get the last little problems >>> solved. >>> Just as example for you: with some 30 minutes manual curation for a 4 MB >>> bacterium, my error rate in an internal test has been 0 errors in 16 >>> megabases >>> and only 2 "dubious" SNPs (which turned out not to be SNPs). >>> >>> Regards, >>> Bastien >>> >>> -- >>> You have received this mail because you are subscribed to the mira_talk >>> mailing list. For information on how to subscribe or unsubscribe, please >>> visit http://www.chevreux.org/mira_mailinglists.html >>> >> >> > -- Sharmistha Saha,