[overture] Re: Building v24 on Blue Gene P
- From: "J. P. Bernstein" <astro@xxxxxxx>
- To: overture@xxxxxxxxxxxxx
- Date: Wed, 30 May 2012 15:53:21 -0500 (CDT)
Thanks, Erik.
Turns out I needed "-WF,-D" for xlf commands and no modification for xlc and
xlC commands. I found, per the ALCF wiki
(http://www.alcf.anl.gov/resource-guides/quick-reference-guide):
----------
Preprocessing is performed differently by XL Fortran and C compilers. To define
a preprocessor variable VAR:
-DVAR - in C/C++
-WF,-DVAR - in XL Fortran
----------
My test was successful:
mpixlf77_r -O -w -qarch=450d -qtune=450 -qmaxmem=-1 -qpic
-WF,-DBL_AUTO_INSTANTIATE -qautodbl=dbl4
-I/home/jpbernst/Code/Overture/Overture.v24/include
-I/home/jpbernst/Code/Overture/A++P++-0.8.0/P++/install/include -c coeff.f
** laplaciancoeff === End of Compilation 1 ===
** laplaciancoeff4 === End of Compilation 2 ===
** identitycoeff === End of Compilation 3 ===
1501-510 Compilation successful for file coeff.f.
I Checked for "-D" in a make log for FORTRAN compile lines. All but one line
had -DBL_AUTO_INSTANTIATE only. One line had -DKK_NRB_BLOCKED:
mpixlf77_r -O -w -qarch=450d -qtune=450 -qmaxmem=-1 -qpic
-Wl,-DBL_AUTO_INSTANTIATE -qautodbl=dbl4
-I/home/jpbernst/Code/Overture/Overture.v24/include
-I/home/jpbernst/Code/Overture/A++P++-0.8.0/P++/install/include
-DKK_NRB_BLOCKED -c nurbs_eval.F
The source is $Overture/Mapping/Makefile.in:
----------
# Compile this optimized (note extra macro definition)
nurbs_eval.o : ${@:.o=.F}; $(FC) $(FFLAGSO) -DKK_NRB_BLOCKED -c ${@:.o=.F}
#xlc nurbs_eval.o : ${@:.o=.F}; $(FC) $(FFLAGSO) -WF,-DKK_NRB_BLOCKED -c
${@:.o=.F}
----------
I modified the lines above to be:
----------
# Compile this optimized (note extra macro definition)
#nurbs_eval.o : ${@:.o=.F}; $(FC) $(FFLAGSO) -DKK_NRB_BLOCKED -c ${@:.o=.F}
#xlc
nurbs_eval.o : ${@:.o=.F}; $(FC) $(FFLAGSO) -WF,-DKK_NRB_BLOCKED -c ${@:.o=.F}
----------
and, in $Overture/config/MakeDefs.bgp, set:
cc_FLAGS = -w -qarch=450d -qtune=450 -qmaxmem=-1 -qpic -DBL_AUTO_INSTANTIATE
CC_FLAGS = -w -qarch=450d -qtune=450 -qmaxmem=-1 -qpic -DBL_AUTO_INSTANTIATE
-qlanglvl=redefmac
FF_FLAGS = -w -qarch=450d -qtune=450 -qmaxmem=-1 -qpic -WF,-DBL_AUTO_INSTANTIATE
I then cleaned, reconfigured, and restarted the build, which ran through to
$Overture/bin compilation, as before, but this time did not have the boxlib
errors at ogen linking. On to the other linker errors.
Thank again for you help.
Best,
Joe
----- Original Message -----
From: "Erik Wilson" <wilsone@xxxxxx>
To: overture@xxxxxxxxxxxxx
Sent: Tuesday, May 29, 2012 11:09:39 PM
Subject: [overture] Re: Building v24 on Blue Gene P
Hi Joe,
If I remember correctly the IBM XL Fortran compiler requires something
in addition to -D, maybe "-Wl,-D", the man page should have more info. I
am guessing you can skip adding that definition to FF_FLAGS tho and it
should work ok.
Cheers,
-Erik
On 05/24/2012 01:40 PM, Erik Wilson wrote:
>
> Hi Joe,
>
> I think the answer is here:
> https://cismwiki.bu.edu/wiki/Lfm/Prerequisites/Overture
>
> "Add the flag-DBL_AUTO_INSTANTIATE to cc_FLAGS, CC_FLAGS and FF_FLAGS
> in config/MakeDefs.[ARCHITECTURE]. Then run gmake clean and return to
> step 2 above (re-run configure and gmake to rebuild Overture)."
>
> Cheers,
> -Erik
>
>
> On 05/24/2012 12:29 PM, J. P. Bernstein wrote:
>> Hello All,
>>
>> Due to problems with undefined references in the Mesa-7.2 build, I
>> implemented by hand in stock Overturev24 the noGL functionality, were
>> appropriate, from the older CISM-modified version of Overture from:
>>
>> https://cismwiki.bu.edu/Download/Overture
>>
>> I then extended the Overturev24 noX11 functionality to deal with the
>> $Overture/static directory build problems from previous emails. In
>> addition, I set:
>>
>> #undef OV_USE_UNDERSCORE
>>
>> in OvertureDefine.h.in as BG/P does not recognize underscores in
>> FORTRAN calls from C++. I also removed:
>>
>> -DBL_FORT_USE_UNDERSCORE
>>
>> from the boxlib compilation.
>>
>> Now, upon doing a serial build, I get to the $Overture/bin
>> compilation and then see the following failures:
>>
>> make[1]: Entering directory
>> `/gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/bin'
>> perl ../config/makeDepend -f depend -Y --
>> -I/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include
>> -I/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include
>> -I/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include
>> -DBL_USE_DOUBLE
>> -DBL_Solaris -- plotStuffDriver.C plotStuffFunction.C ogenDriver.C
>> ogenFunction.C rap.C mbuilder.C ps2ppm.C decompress.C
>> run makedepend ...
>> ...done
>> touch depend
>> make[1]: Leaving directory
>> `/gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/bin'
>> make[1]: Entering directory
>> `/gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/bin'
>> xlC -qpic -qmaxmem=-1
>> -I/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include
>> -I/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include
>> -I/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include
>> -DBL_USE_DOUBLE
>> -DBL_Solaris -g -c ogenDriver.C
>> "/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include/A++_notemplates.h",
>>
>> line 1339.21: 1540-1091 (W) The friend declaration "APP_view"
>> specifies a default argument expression and is not a definition.
>> . . .
>> "/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/nullgl.h",
>> line 849.44: 1540-1101 (W) A return value of type "unsigned char" is
>> expected.
>> "/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/nullgl.h",
>> line 860.42: 1540-1101 (W) A return value of type "int" is expected.
>> "/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/nullgl.h",
>> line 861.34: 1540-1101 (W) A return value of type "unsigned int" is
>> expected.
>> "/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/nullgl.h",
>> line 862.51: 1540-1101 (W) A return value of type "const unsigned
>> char *" is expected.
>> . . .
>> xlC -qpic -qmaxmem=-1
>> -I/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include
>> -I/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include
>> -I/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include
>> -DBL_USE_DOUBLE
>> -DBL_Solaris -g -c ogenFunction.C
>> "/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include/A++_notemplates.h",
>>
>> line 1339.21: 1540-1091 (W) The friend declaration "APP_view"
>> specifies a default argument expression and is not a definition.
>> . . .
>> "/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/nullgl.h",
>> line 860.42: 1540-1101 (W) A return value of type "int" is expected.
>> . . .
>> xlC -qpic -qmaxmem=-1
>> -I/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include
>> -I/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include
>> -I/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/include
>> -DBL_USE_DOUBLE
>> -DBL_Solaris -g -o ogen ogenDriver.o ogenFunction.o
>> -Wl,-rpath,/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib
>> -L/home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib
>> -lOverture -lOverture_static
>> -Wl,-rpath,/home/jpbernst/Code/hdf5-1.8.0/hdf5/lib
>> -L/home/jpbernst/Code/hdf5-1.8.0/hdf5/lib -lhdf5
>> -Wl,-rpath,/soft/apps/zlib-1.2.3/lib -L/soft/apps/zlib-1.2.3/lib -lz
>> -Wl,-rpath,/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/lib
>> -L/home/jpbernst/Code/Overture/serial/A++P++-0.8.0/A++/install/lib
>> -lApp -lApp_static -Wl,-rpath,/soft/apps/ibmcmp/xlf/bg/11.1/bglib
>> -L/soft/apps/ibmcmp/xlf/bg/11.1/bglib -lxlopt -lxl -lxlf90 -lxlfmath
>> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib/libOverture.a(second3.o):
>>
>> In function `_start':
>> /gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/mapUtil/second3.c:21:
>> multiple definition of `_start'
>> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o:init.c:(.text+0x0):
>>
>> first defined here
>> /usr/bin/ld: Warning: size of symbol `_start' changed from 36 in
>> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o to 32
>> in
>> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib/libOverture.a(second3.o)
>> /soft/apps/zlib-1.2.3/lib/libz.a(compress.o): In function `compress':
>> compress.c:(.text+0xe0): multiple definition of `compress'
>> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib/libOverture.a(TriangleSource.o):TriangleSource.c:(.text+0x264e0):
>>
>> first defined here
>> /usr/bin/ld: Warning: size of symbol `compress' changed from 372 in
>> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib/libOverture.a(TriangleSource.o)
>>
>> to 36 in /soft/apps/zlib-1.2.3/lib/libz.a(compress.o)
>> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o: In
>> function `_start':
>> init.c:(.text+0x20): relocation truncated to fit: R_PPC_REL24 against
>> symbol `__libc_start_main@@GLIBC_2.0' defined in .plt section in
>> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o
>> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/crtbegin.o:(.fini+0x0):
>> relocation truncated to fit: R_PPC_REL24 against `.text'
>> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/crtend.o:(.init+0x0):
>> relocation truncated to fit: R_PPC_REL24 against `.text'
>> ogenDriver.o: In function `__sinit65535()':
>> ogenDriver.C:(.text+0x14): relocation truncated to fit:
>> R_PPC_LOCAL24PC against symbol `_GLOBAL_OFFSET_TABLE_' defined in
>> .got section in
>> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o+fffffffffffffffc
>> ogenDriver.o: In function `__sinit65535()':
>> /usr/include/c++/4.1.2/iostream:76: relocation truncated to fit:
>> R_PPC_PLTREL24 against symbol
>> `std::ios_base::Init::Init()@@GLIBCXX_3.4' defined in .plt section in
>> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o
>> /usr/include/c++/4.1.2/iostream:76: relocation truncated to fit:
>> R_PPC_PLTREL24 against symbol `__cxa_atexit@@GLIBC_2.1.3' defined in
>> .plt section in
>> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o
>> ogenDriver.o: In function `aString::__dftbdt(std::string*)':
>> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/aString.H:214:
>>
>> relocation truncated to fit: R_PPC_LOCAL24PC against symbol
>> `_GLOBAL_OFFSET_TABLE_' defined in .got section in
>> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o+fffffffffffffffc
>> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/aString.H:214:
>>
>> relocation truncated to fit: R_PPC_PLTREL24 against symbol
>> `std::basic_string<char, std::char_traits<char>, std::allocator<char>
>> >::~basic_string()@@GLIBCXX_3.4' defined in .plt section in
>> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o
>> ogenDriver.o: In function `aString::operator char const*() const':
>> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/aString.H:214:
>>
>> relocation truncated to fit: R_PPC_LOCAL24PC against symbol
>> `_GLOBAL_OFFSET_TABLE_' defined in .got section in
>> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o+fffffffffffffffc
>> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/aString.H:214:
>>
>> relocation truncated to fit: R_PPC_PLTREL24 against symbol
>> `std::string::c_str() const@@GLIBCXX_3.4' defined in .plt section in
>> /usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib/crt1.o
>> ogenDriver.o: In function `MappingInformation::MappingInformation()':
>> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../include/MappingInformation.h:27:
>>
>> additional relocation overflows omitted from the output
>> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib/libOverture.a(generateMatrix.o):
>>
>> In function `Oges::generateMatrix(int&)':
>> generateMatrix.C:(.text+0x1188): undefined reference to `ds2y'
>> generateMatrix.C:(.text+0x1410): undefined reference to `qs2i1d'
>> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib/libOverture_static.a(OvertureInit.o):
>>
>> In function `Overture::getGraphicsInterface(aString const&, bool,
>> int, char**)':
>> /gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/static/OvertureInit.C:554:
>>
>> undefined reference to
>> `GL_GraphicsInterface::GL_GraphicsInterface(bool, aString const&)'
>> /gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/static/OvertureInit.C:556:
>>
>> undefined reference to
>> `GL_GraphicsInterface::GL_GraphicsInterface(int&, char**, aString
>> const&)'
>> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib/libOverture_static.a(OvertureInit.o):
>>
>> In function `Overture::nullFloatGridCollectionFunction()':
>> /gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/static/OvertureInit.C:491:
>>
>> undefined reference to
>> `floatGridCollectionFunction::floatGridCollectionFunction()'
>> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib/libOverture_static.a(OvertureInit.o):
>>
>> In function `Overture::nullFloatMappedGridFunction()':
>> /gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/static/OvertureInit.C:466:
>>
>> undefined reference to
>> `floatMappedGridFunction::floatMappedGridFunction()'
>> /home/jpbernst/Code/Overture/serial/Overture.v24/bin/../lib/libOverture_static.a(OvertureInit.o):
>>
>> In function `Overture::start(int&, char**&)':
>> /gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/static/OvertureInit.C:199:
>>
>> undefined reference to
>> `floatMappedGridFunction::floatMappedGridFunction()'
>> /gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/static/OvertureInit.C:203:
>>
>> undefined reference to
>> `floatGridCollectionFunction::floatGridCollectionFunction()'
>> /soft/apps/ibmcmp/xlf/bg/11.1/bglib/libxlf90.so: undefined reference
>> to `omp_get_thread_num'
>> make[1]: *** [ogen] Error 1
>> make[1]: Leaving directory
>> `/gpfs/home/jpbernst/Code/Overture/serial/Overture.v24/bin'
>> make: *** [all] Error 2
>>
>> While I am continuing to investigate these, I would greatly
>> appreciate any input.
>>
>> In addition, the parallel Overturev24 build fails with many of the
>> same problems plus, e.g.:
>>
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../include/aString.H:214:
>> additional relocation overflows omitted from the output
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(GridCollection.o):
>>
>> In function `List<Box>::append(Box const&)':
>> /home/jpbernst/Code/Overture/Overture.v24/include/BL_List.H:558:
>> undefined reference to `List<Box>::addAfter(ListLink<Box>*, Box const&)'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(GridCollection.o):
>>
>> In function `List<Box>::~List()':
>> /home/jpbernst/Code/Overture/Overture.v24/include/BL_List.H:542:
>> undefined reference to `List<Box>::clear()'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(GridCollection.o):
>>
>> In function `BoxList::clear()':
>> /home/jpbernst/Code/Overture/Overture.v24/include/BoxList.H:404:
>> undefined reference to `List<Box>::clear()'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(ParentChildSiblingInfo.o):
>>
>> In function `List<Box>::append(Box const&)':
>> /home/jpbernst/Code/Overture/Overture.v24/include/BL_List.H:558:
>> undefined reference to `List<Box>::addAfter(ListLink<Box>*, Box const&)'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(ParentChildSiblingInfo.o):
>>
>> In function `List<Box>::~List()':
>> /home/jpbernst/Code/Overture/Overture.v24/include/BL_List.H:542:
>> undefined reference to `List<Box>::clear()'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(ParentChildSiblingInfo.o):
>>
>> In function `BoxList::join(BoxList const&)':
>> /home/jpbernst/Code/Overture/Overture.v24/include/BoxList.H:397:
>> undefined reference to `List<Box>::join(List<Box> const&)'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(ParentChildSiblingInfo.o):
>>
>> In function `BoxList::clear()':
>> /home/jpbernst/Code/Overture/Overture.v24/include/BoxList.H:404:
>> undefined reference to `List<Box>::clear()'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(ParentChildSiblingInfo.o):
>>
>> In function `BoxList::length() const':
>> /home/jpbernst/Code/Overture/Overture.v24/include/BoxList.H:420:
>> undefined reference to `List<Box>::length() const'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(InterpolateRefinements.o):
>>
>> In function `List<Box>::~List()':
>> /home/jpbernst/Code/Overture/Overture.v24/include/BL_List.H:542:
>> undefined reference to `List<Box>::clear()'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(Regrid.o):
>>
>> In function `Regrid::splitBox(Box&, intSerialArray const&, BoxList&,
>> int)':
>> Regrid.C:(.text+0x4a48): undefined reference to
>> `List<Box>::addAfter(ListLink<Box>*, Box const&)'
>> Regrid.C:(.text+0x4b4c): undefined reference to
>> `List<Box>::addAfter(ListLink<Box>*, Box const&)'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(Regrid.o):
>>
>> In function `BoxList::~BoxList()':
>> Regrid.C:(.text+0x4d64): undefined reference to `List<Box>::clear()'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(Regrid.o):
>>
>> In function `Regrid::buildProperNestingDomains(GridCollection&, int,
>> int, int, int)':
>> Regrid.C:(.text+0x9c6c): undefined reference to
>> `List<Box>::addAfter(ListLink<Box>*, Box const&)'
>> Regrid.C:(.text+0x9e50): undefined reference to `List<Box>::clear()'
>> Regrid.C:(.text+0x9e58): undefined reference to `List<Box>::clear()'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(Regrid.o):
>>
>> In function `Regrid::buildGrids(GridCollection&, GridCollection&,
>> int, int, int, BoxList*, intSerialArray**)':
>> Regrid.C:(.text+0xcab0): undefined reference to `List<Box>::length()
>> const'
>> Regrid.C:(.text+0xcc38): undefined reference to `List<Box>::length()
>> const'
>> Regrid.C:(.text+0xf250): undefined reference to `List<Box>::length()
>> const'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(Regrid.o):
>>
>> In function `Regrid::regridAligned(GridCollection&, GridCollection&,
>> bool, doubleGridCollectionFunction*, double,
>> intGridCollectionFunction&, int, int)':
>> Regrid.C:(.text+0x14ba8): undefined reference to `List<Box>::clear()'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture.a(Regrid.o):
>>
>> In function `List<Box>::~List()':
>> Regrid.C:(.text+0x1ccb4): undefined reference to `List<Box>::clear()'
>> . . .
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
>>
>> In function `List<Box>::append(Box const&)':
>> /home/jpbernst/Code/Overture/Overture.v24/include/BL_List.H:558:
>> undefined reference to `List<Box>::addAfter(ListLink<Box>*, Box const&)'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
>>
>> In function `BoxList::length() const':
>> /home/jpbernst/Code/Overture/Overture.v24/include/BoxList.H:420:
>> undefined reference to `List<Box>::length() const'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
>>
>> In function `BoxList::simplify()':
>> /gpfs/home/jpbernst/Code/Overture/Overture.v24/boxlib/BoxList.C:341:
>> undefined reference to `List<Box>::remove(ListIterator<Box>&)'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
>>
>> In function `BoxList::clear()':
>> /home/jpbernst/Code/Overture/Overture.v24/include/BoxList.H:404:
>> undefined reference to `List<Box>::clear()'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
>>
>> In function `List<Box>::~List()':
>> /home/jpbernst/Code/Overture/Overture.v24/include/BL_List.H:542:
>> undefined reference to `List<Box>::clear()'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
>>
>> In function `BoxList::BoxList(BoxList const&)':
>> /gpfs/home/jpbernst/Code/Overture/Overture.v24/boxlib/BoxList.C:43:
>> undefined reference to `List<Box>::List(List<Box> const&)'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
>>
>> In function `BoxList::complementIn(Box const&, BoxList const&)':
>> /gpfs/home/jpbernst/Code/Overture/Overture.v24/boxlib/BoxList.C:176:
>> undefined reference to `List<Box>::catenate(List<Box>&)'
>> /gpfs/home/jpbernst/Code/Overture/Overture.v24/boxlib/BoxList.C:177:
>> undefined reference to `List<Box>::remove(ListIterator<Box>&)'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
>>
>> In function `complementIn(Box const&, BoxList const&)':
>> /gpfs/home/jpbernst/Code/Overture/Overture.v24/boxlib/BoxList.C:153:
>> undefined reference to `List<Box>::catenate(List<Box>&)'
>> /gpfs/home/jpbernst/Code/Overture/Overture.v24/boxlib/BoxList.C:154:
>> undefined reference to `List<Box>::remove(ListIterator<Box>&)'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
>>
>> In function `BoxList::intersect(Box const&)':
>> /gpfs/home/jpbernst/Code/Overture/Overture.v24/boxlib/BoxList.C:127:
>> undefined reference to `List<Box>::remove(ListIterator<Box>&)'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
>>
>> In function `BoxArray::operator[](int) const':
>> /home/jpbernst/Code/Overture/Overture.v24/include/BoxArray.H:345:
>> undefined reference to `Array<Box>::get(long) const'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
>>
>> In function `BoxArray::length() const':
>> /home/jpbernst/Code/Overture/Overture.v24/include/BoxArray.H:317:
>> undefined reference to `Array<Box>::length() const'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
>>
>> In function `BoxList::operator=(BoxList const&)':
>> /gpfs/home/jpbernst/Code/Overture/Overture.v24/boxlib/BoxList.C:50:
>> undefined reference to `List<Box>::operator=(List<Box> const&)'
>> /home/jpbernst/Code/Overture/Overture.v24/bin/../lib/libOverture_static.a(BoxList.o):
>>
>> In function `BoxList::BoxList(BoxList const&)':
>> /gpfs/home/jpbernst/Code/Overture/Overture.v24/boxlib/BoxList.C:43:
>> undefined reference to `List<Box>::List(List<Box> const&)'
>> /soft/apps/ibmcmp/xlf/bg/11.1/bglib/libxlf90.a(loadquery.o): In
>> function `ResolveThreadNumFunc':
>> /build/xlf/111/xlf.111.bga-prod-opt-bgp/xlf/rte2/src/io/shr/loadquery.c:(.text+0xe):
>>
>> undefined reference to `omp_get_thread_num'
>> /build/xlf/111/xlf.111.bga-prod-opt-bgp/xlf/rte2/src/io/shr/loadquery.c:(.text+0x16):
>>
>> undefined reference to `omp_get_thread_num'
>> make[1]: Leaving directory
>> `/gpfs/home/jpbernst/Code/Overture/Overture.v24/bin'
>>
>> These Box problems do not appear in the serial build. Any thoughts?
>>
>> Best,
>>
>> Joe
>>
>>
>> ----- Original Message -----
>> From: "Erik Wilson"<wilsone@xxxxxx>
>> To: overture@xxxxxxxxxxxxx
>> Sent: Wednesday, May 9, 2012 9:00:54 PM
>> Subject: [overture] Re: Building v24 on Blue Gene P
>>
>>
>> That is correct, part of my patch adds an ifdef around overlay.c:
>>
>> --- Overture.v24/static/overlay.c 2011-05-18 11:21:54.000000000
>> -0400
>> +++ overture/static/overlay.c 2011-07-31 12:16:52.000000000 -0400
>> @@ -5,11 +5,16 @@
>> and is provided without guarantee or warrantee expressed or
>> implied. This program is -not- in the public domain. */
>>
>> +#include "OvertureDefine.h"
>> +
>> +#ifdef OV_USE_X11
>> +
>> #include<stdlib.h>
>> #include<X11/Xlib.h>
>> #include<X11/Xutil.h>
>> #include<X11/Xmd.h>
>>
>> +
>> /* Transparent type values */
>> /* None 0 */
>> #define TransparentPixel 1
>> @@ -225,5 +230,7 @@ void detectOverlaySupport(Display *dpy,
>> /* printf("**** info: overlay visual found *****\n"); */
>> *overlayColormap = XCreateColormap(dpy,
>> DefaultRootWindow(dpy),overlayVisual, AllocNone); /* wdh */
>> }
>> -
>> }
>> +
>> +
>> +#endif // OV_USE_X11
>>
>> Cheers,
>> -Erik
>>
>>
>> On 05/09/2012 04:30 PM, Bill Henshaw wrote:
>>> Joe;
>>> I guess that Eric's patches must have removed the compilation of
>>> overlay.c which should not be compiled if there is no X11.
>>>
>>> ...Bill
>>>
>>> On 05/09/2012 04:07 PM, J. P. Bernstein wrote:
>>>> Hello All,
>>>>
>>>> Now a funny failure has cropped up. Upon restarting the build in
>>>> order to verify steps taken so far, I got this failure:
>>>>
>>>> mpixlc_r -w -qarch=450d -qtune=450 -qmaxmem=-1 -qpic
>>>> -I/home/jpbernst/Code/Overture/Overture.v24-pmake/include
>>>> -I/home/jpbernst/Code/Overture/A++P++-0.8.0/P++/install/include -g
>>>> -DSHM -DUSE_PPP -I. -I/include -I/home/jpbernst/Code/Mesa-7.2/include
>>>> -c overlay.c
>>>> "overlay.c", line 9.10: 1506-296 (S) #include file<X11/Xlib.h> not
>>>> found.
>>>> "overlay.c", line 10.10: 1506-296 (S) #include file<X11/Xutil.h> not
>>>> found.
>>>> "overlay.c", line 11.10: 1506-296 (S) #include file<X11/Xmd.h> not
>>>> found.
>>>>
>>>> I verified that it is now happening after creating a fresh Overture
>>>> build directory from the tarball and trying a build with the
>>>> following configuration command:
>>>>
>>>> ./configure bg noX11 parallel
>>>>
>>>> with only the following minimal modifications to the Overture source
>>>> in order to enable a build on BG/P:
>>>>
>>>> 1) Removed "-fPIC -Wno-deprecated" from PFLAGS in
>>>> GridFunction/Makefile.in (line 115).
>>>>
>>>> 2) Enclosed MPI info lookup code within "if( $machine ne "bg" ) {}".
>>>>
>>>> 3) Adding to configure:
>>>>
>>>> if( $machine eq "bg"&& $double ne "" )
>>>> {
>>>> $FortranDouble = "-qautodbl=dbl4";
>>>> }
>>>>
>>>> I am at a loss as to why this started. Should this not be taken care
>>>> of by the noX11 configure option? I was not getting this build error
>>>> before. My MakeDefs file content is appended below.
>>>>
>>>> Best,
>>>>
>>>> Joe
>>>>
>>>>
>>>
>>
>>
>
>
>
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