[mira_talk] Re: problem with miraSearchESTSNPs
- From: Jackie Lighten <jc807177@xxxxxx>
- To: <mira_talk@xxxxxxxxxxxxx>
- Date: Sat, 23 Apr 2011 13:10:34 -0300
I when I removed ³454_SETTINGS² and ³est², parameters parsed fine.
Cheers,
J
On 11-04-23 12:59 PM, "Jackie Lighten" <jc807177@xxxxxx> wrote:
> Thanks for the quick reply. Feel stupid now!
>
> So I changed my code, yet now get errors associated with ³esps1²
>
> ³
> Parsing parameters: --project=skt --job=denovo,est,normal,454
> 454_SETTINGS,esps1
>
>
> ,
>
> ========================= Parameter parsing error(s)
> ==========================
>
> * Parameter section: '(none)'
> * unrecognised string or unexpected character: esps1
>
>
==============================================================================>
=
>
> Fatal error (may be due to problems of the input data or parameters):
>
> "Error while parsing parameters, sorry."
>
> ->Thrown: void MIRAParameters::parse(istream & is, vector<MIRAParameters> &
> Pv, MIRAParameters * singlemp)
> ->Caught: main
>
> Aborting process, probably due to error in the input data or parametrisation.
> Please check the output log for more information.
> For help, please write a mail to the mira talk mailing list.
>
> CWD: /home/jackie/Desktop/Mira/bin
> Thank you for noticing that this is *NOT* a crash, but a
> controlled program stop.
> jackie@ubuntu:~/Desktop/Mira/bin$²
>
>
> From: mira_talk-bounce@xxxxxxxxxxxxx [mailto:mira_talk-bounce@xxxxxxxxxxxxx]
> On Behalf Of Bastien Chevreux
> Sent: April-23-11 12:37 PM
> To: mira_talk@xxxxxxxxxxxxx
> Subject: [mira_talk] Re: problem with miraSearchESTSNPs
>
>
> On Apr 23, 2011, at 17:08 , Jackie wrote:
>>
>> I am having issue running ESTSNP search.
>>
>> Here is my code: miraSearchESTSNPs --project=skt --job==denovo,normal,454
>> 454_SETTINGS,esps1 >log_assembly_esps1.txt
>>
>> [...]
>>
>> If I put in the above code, nothing happens;
>
>
> Instead of
>
> "--job=="
>
> please use
>
> "--job="
>
>
>
> (only one equal sign)
>
>
>
> Interesting error though, need to see whether I can have the parser catch
> that.
>
>
>
> Bastien
>
>
>
>
>
Other related posts:
