[mira_talk] Re: problem with miraSearchESTSNPs
- From: "Jackie" <jc807177@xxxxxx>
- To: <mira_talk@xxxxxxxxxxxxx>
- Date: Sat, 23 Apr 2011 12:59:55 -0300
Thanks for the quick reply. Feel stupid now!
So I changed my code, yet now get errors associated with "esps1"
"
Parsing parameters: --project=skt --job=denovo,est,normal,454
454_SETTINGS,esps1
,
========================= Parameter parsing error(s)
==========================
* Parameter section: '(none)'
* unrecognised string or unexpected character: esps1
============================================================================
===
Fatal error (may be due to problems of the input data or parameters):
"Error while parsing parameters, sorry."
->Thrown: void MIRAParameters::parse(istream & is, vector<MIRAParameters> &
Pv, MIRAParameters * singlemp)
->Caught: main
Aborting process, probably due to error in the input data or
parametrisation.
Please check the output log for more information.
For help, please write a mail to the mira talk mailing list.
CWD: /home/jackie/Desktop/Mira/bin
Thank you for noticing that this is *NOT* a crash, but a
controlled program stop.
jackie@ubuntu:~/Desktop/Mira/bin$"
From: mira_talk-bounce@xxxxxxxxxxxxx [mailto:mira_talk-bounce@xxxxxxxxxxxxx]
On Behalf Of Bastien Chevreux
Sent: April-23-11 12:37 PM
To: mira_talk@xxxxxxxxxxxxx
Subject: [mira_talk] Re: problem with miraSearchESTSNPs
On Apr 23, 2011, at 17:08 , Jackie wrote:
I am having issue running ESTSNP search.
Here is my code: miraSearchESTSNPs --project=skt --job==denovo,normal,454
454_SETTINGS,esps1 >log_assembly_esps1.txt
[...]
If I put in the above code, nothing happens;
Instead of
"--job=="
please use
"--job="
(only one equal sign)
Interesting error though, need to see whether I can have the parser catch
that.
Bastien
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