[mira_talk] Re: mira 3.9 manifest file for hybrid assembly
- From: Marcelo Brandão <brandao.marcelo@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Fri, 12 Oct 2012 23:45:29 -0500
Wow,
Thanks Bastien, I do not realise that I need this. I will try it and post
the result here.
Happy weekend!
Marcelo
2012/10/12 Bastien Chevreux <bach@xxxxxxxxxxxx>
> On Oct 12, 2012, at 23:16 , Marcelo Brandão wrote:
>
> [...]
> "In file ../map3_manifest.dat: line
> -SK:mnr=1:pr=70:hss=2
> has keyword '-sk:mnr' which is not recognised."
>
>
> Ah, I see. You forgot the backslashes at the end of the parameter lines.
> From the manual:
>
> Note
>
> For improved readability, you can distribute parameters across several
> lines either by pre-fixing every line with parameter=, like so:
>
> job=denovo,genome,draft
> parameters= 454_SETTINGS -AS:mrl=80:bdq=10
> parameters= SOLEXA_SETTINGS -AS:mrl=30:bdq=15
>
> Alternatively you can use a backslash at the end of a parameter line to
> indicate that the next line is a continuing line, like so:
>
> job=denovo,genome,draft
> parameters= 454_SETTINGS -AS:mrl=80:bdq=10 *\*
> SOLEXA_SETTINGS -AS:mrl=30:bdq=15
>
>
> Note the backslash in the second version.
>
> B.
>
>
--
Marcelo Mendes Brandão
Academic Visitor at University of Alberta @ Edmonton
Website: http://bioinfo.esalq.usp.br
AtPIN: http://bioinfo.esalq.usp.br/atpin
SKYPE: mmbrand
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