[mira_talk] Re: mira 3.9 manifest file for hybrid assembly
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Sat, 13 Oct 2012 02:02:57 +0200
On Oct 12, 2012, at 23:16 , Marcelo Brandão wrote:
> [...]
> "In file ../map3_manifest.dat: line
> -SK:mnr=1:pr=70:hss=2
> has keyword '-sk:mnr' which is not recognised."
Ah, I see. You forgot the backslashes at the end of the parameter lines. From
the manual:
Note
For improved readability, you can distribute parameters across several lines
either by pre-fixing every line with parameter=, like so:
job=denovo,genome,draft
parameters= 454_SETTINGS -AS:mrl=80:bdq=10
parameters= SOLEXA_SETTINGS -AS:mrl=30:bdq=15
Alternatively you can use a backslash at the end of a parameter line to
indicate that the next line is a continuing line, like so:
job=denovo,genome,draft
parameters= 454_SETTINGS -AS:mrl=80:bdq=10 \
SOLEXA_SETTINGS -AS:mrl=30:bdq=15
Note the backslash in the second version.
B.
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