[mira_talk] Re: convert_project Error
- From: Robert Trygve Good <rtgood@xxxxxxxxxxxxxx>
- To: "<mira_talk@xxxxxxxxxxxxx>" <mira_talk@xxxxxxxxxxxxx>
- Date: Tue, 30 Oct 2012 03:51:19 +0000
Further to this thread the sam file has a line that contains a message about
being assembled by mira.
Tablet will not load this file unless these lines are removed
Cheers
Rob
On 30/10/2012, at 1:44 PM, Robert Trygve Good wrote:
> I'm using for the first time mira3.9.5 .
> After assembly for viewing in Tablet I used:
>
> convert_project -f maf -t ace Gecardoidea_natalis_out.maf
> Gecardoidea_natalis_out.ace
>
>
> Same error with -f caf instead of -f maf but -t sam works
>
> gave
>
>
> Generated 9 unique template ids for 9 valid reads.
> Error while dumping Gecardoidea_natalis_rep_c184.
>
> Internal logic/programming/debugging error (*sigh* this should not have
> happened).
> Please file a bug report on http://sourceforge.net/apps/trac/mira-assembler/
>
> "Read does not cover given contigposition"
>
> ->Thrown: char Contig::getQualityInRead(int32 contigposition, int32 readindex)
> ->Caught: void dumpContigs(list<Contig> & clist, ostream & fout)
>
> Aborting process, probably due to an internal error.
>
>
> Fedora 17 on a sun x2200
>
>
> Rob Good
> rtgood@xxxxxxxxxxxxxx
> Department of Genetics
> Royal Pde
> University of Melbourne
> 3010
>
> +61383442347
> 0434058250
>
>
>
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Rob Good
rtgood@xxxxxxxxxxxxxx
Department of Genetics
Royal Pde
University of Melbourne
3010
+61383442347
0434058250
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