Is it possible to add a scaffolding algorithm based on the data?
Essentially find k-mers in the nanopore read belonging to 2 contigs
suggesting they are linked?
Thanks for the input, Adrian
On Monday, 7 March 2016, Bastien Chevreux <bach@xxxxxxxxxxxx> wrote:
I currently do not plan to support nanopore with MIRA 4 or 5. The
fragmentation when feeding ~10% erroneous data does not really surprise me.
B.
On March 7, 2016 at 9:33 AM Adrian Pelin <apelin20@xxxxxxxxx
<javascript:_e(%7B%7D,'cvml','apelin20@xxxxxxxxx');>> wrote:
Hello,
I was wondering if there would be support eventually for nanocorrected
data of nanopore reads. These can now achieve error rates below 10%.
I am trying to feed these as pacbiohq, however am getting very fragmented
assemblies.
Adrian
