[mira_talk] Re: run time complications withmira_3.0.0_prod_linux-gnu_x86_64_static
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 3 Mar 2010 16:38:14 +0100
On Mittwoch 03 März 2010 Laurent MANCHON wrote:
> i use the same version of mira to assemble 454 reads and it's work fine
> for me with good results.
> this is the command line i use:
>
> bin/mira -project=trimmed_NG-5114_Hemo_sequence
> -fasta=trimmed_NG-5114_Hemo_sequence.fna -job=denovo,est,normal,454
> -notraceinfo COMMON_SETTINGS -GENERAL:kcim=yes,not=4 -CL:pec=no
> -SK:mnr=yes,nrr=8,mmhr=6 -CO:asir=yes,mr=no 454_SETTINGS -LR:wqf=no
> -CO:fnicpst=yes,rodirs=10
> -CL:cpat=no,pvlc=no,qc=no,bsqc=no,mbc=no,emlc=yes,mlcr=0,smlc=0,emrc=yes,mr
> cr=0,smrc=0 -OUT:sssip=no
> -AL:bip=5,bmin=10,mrs=98:egp=yes:egpl=reject_codongaps:megpp=100,mo=60
> -AS:mrl=30,bdq=30,epoq=no
-SK:mnr=yes:nrr=8 does the magic for you :-)
Regards,
Bastien
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