[mira_talk] Re: building 4.9.5 with gcc 4.4.7?
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Fri, 9 Oct 2015 21:53:44 -0400
On 09 Oct 2015, at 6:39 , Langhorst, Brad <Langhorst@xxxxxxx> wrote:
I was planning to use mirabait to identify transcripts http://up:32400/web/
<http://up:32400/web/>itch homologous to fragments under 80 bp long…
Interesting http address that :-)
Just for mirabait? Then you are on the safe side as reads themselves can have
4^32-1 bases in the MIRA library.
Just for mapping and these reads are used as reference? There again, you are on
the safe side: references too can have up to 2^32-1 bp.
If you plan to do assemblies, then your reads MUST be shorter than 32776 bp,
because 2 reads of that length with a 15 bp overlap reach a total alignment
length of 65535.
B.
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