[mira_talk] Re: SFF_EXTRACT
- From: Peter Cock <p.j.a.cock@xxxxxxxxxxxxxx>
- To: "mira_talk@xxxxxxxxxxxxx" <mira_talk@xxxxxxxxxxxxx>
- Date: Mon, 2 Jun 2014 14:02:54 +0100
On Mon, Jun 2, 2014 at 1:57 PM, Bobby Paul <bobbypaul29@xxxxxxxxx> wrote:
> Thank you Bastien.
>
>
> I would like to do some analysis with fasta file. I have both SFF and FASTQ
> files from ion torrent platform. But failed to convert these files into
> sequence fasta.
If you are using MIRA, give it the Ion Torrent data as FASTQ format.
(You could use FASTA + QUAL files, but they just hold the same
information as FASTQ while taking up significantly more disk space).
Peter
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