[mira_talk] Re: Problems using sff extract

  • From: Bastien Chevreux <bach@xxxxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Tue, 14 Dec 2010 00:21:52 +0100

On Montag 13 Dezember 2010 Cleo Ho wrote:
> I had the same problem before, and it turned out I didn't put ssaha2 in the
>  correct directory. ssaha2 should be put in place where mira can call it
>  directly by the its command line from any directory. Such directory may be
>  usr/local/bin, for example, in a Linux system. Hope this helps.


Ooops ... I thought that this was covered by sff_extract checking for SSAHA2 
... but I think I might have de-activated the check when I git reports that it 
misfired. Hmmm, have to rethink it.

Thanks for that input, helped a lot as it seems :-)

B.

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