[mira_talk] Getting coverage by each technology per each contig
- From: Martin MOKREJŠ <mmokrejs@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Tue, 20 May 2014 12:27:53 +0200
Hi,
did anybody try to write some script to calculate how many reads were used
for each resulting contig? Or even better, getting coverage by each technology
for a given contig? I think it would be helpful to have these in the resulting
FASTA files. I think it was already mentioned on this list but I just cannot
find it.
What I am really after is to split the resulting contigs into those specific
to one or another technology. Looks mira_convert cannot do this right away but
I hope to collect the contig names first and then ask just for them. So, in two
executions could do the job I think.
Thank you for ideas,
Martin
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