[mira_talk] mira parallel execution
- From: Sucheta Tripathy <sutripa@xxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 6 Apr 2009 19:03:29 -0400 (EDT)
Hi,
I have been stuck with MIRA for sometimes now. I wanted to assemble our genome
sequences with 1.1 million reads of average length of 720 bases(Estimated
genome size is around 95 MB). My MIRA run crashed half way when the memory
requirement became too intense(I guess it needed approximately 180 GB). Now
that in our university set up we get clusters that can match upto this memory
requirement, I am not sure if the code will run parallel. Any advise on this
will really help me to get going.
Many thanks
Sucheta
--
Virginia Bioinformatics Institute,
Virginia Polytechnic Institute and State University,
Blacksburg, VA-24060.
Phone: 540-231-8138.
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