[mira_talk] Re: denovo results clarifications
- From: Stefano Ghignone <stefano.ghignone@xxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 31 Mar 2010 16:44:35 +0200
On 03/28/2010 05:30 PM, Bastien Chevreux wrote:
Would the reads you have shown perhaps be very, very low coverage?
Finally, I got the point!!
It's not a low coverage region, but it is a hyper covered stretch!!! so
the default value for -SK:nrr=100 was not enough to avoid the masking as
nasty repeats! at the moment I'm giving a try using nrr=200! I'll let
you know if it works...by the way...I will sleep tonight!
cheers,
stefano
--
Dr. Stefano Ghignone
Istituto per la Protezione delle Piante, Sez. Torino - CNR
c/o Dpt. Plant Biology, University of Turin
V.le P.A. Mattioli, 25
I-10125 Turin
Italy
Phone: +39 011 6502927 ext. 48
Fax: +39 011 6705962
e-mail: stefano.ghignone@xxxxxxxx
MSN: ste.ghi@xxxxxxxxxxx
http://www.bioveg.unito.it
http://www.sppadbase.com
http://www.dinamycode.it/
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