[mira_talk] Re: denovo results clarifications
- From: Stefano Ghignone <stefano.ghignone@xxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 24 Mar 2010 17:34:20 +0100
Bastien,
On 03/22/2010 11:06 PM, Bastien Chevreux wrote:
This needs some lofile reading at the moment, I'm sorry.
thanks a lot for your really exhaustive explanations.
I had a look expecially at the *skimmarknastyrepeats* file where I found
really bad things....
But I also verified that some contigs I previously got with v.2.9* are
no more present in the assembly: the bad news is that I PCR validated
and re-sequenced some of them and now I get that these sequences are
listed as debris.....
This sound weird...
s.
--
Dr. Stefano Ghignone
Istituto per la Protezione delle Piante, Sez. Torino - CNR
c/o Dpt. Plant Biology, University of Turin
V.le P.A. Mattioli, 25
I-10125 Turin
Italy
Phone: +39 011 6502927 ext. 48
Fax: +39 011 6705962
e-mail: stefano.ghignone@xxxxxxxx
MSN: ste.ghi@xxxxxxxxxxx
http://www.bioveg.unito.it
http://www.sppadbase.com
http://www.dinamycode.it/
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