[mira_talk] Fwd: mapping
- From: Brian Forde <bforde@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Fri, 3 Apr 2009 10:10:08 +0100
Hello all,
I am attempting to do a mapping assembly using a genbank
file which i downloaded from ncbi
I ran the assembly as folllows
mira -project=454reads
-job=mapping,accurate,sanger,454,genome -LR:sanft=fofexp
-DI:exp=/path/to/exp:scf=/path/to/scf
-SK:mnr=yes -SB:lsd=yes:lb=yes:bft=gbf
but keep getting the following error.
Fatal Error: "While trying to load SANGER type data: type of
file to load unknown"
->Thrown: void Assembly::loadSequenceData()
->Caught: main
Program aborted.
Also is there a difference (i'm assuming not) between the gbf files mira is
looking for and the gb files downloadable from genbank
regards
Brian
--
"If scientists knew what they were doing they wouldn't call it research"
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