[mira_talk] Re: Fwd: mapping
- From: Brian Forde <bforde@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 6 Apr 2009 10:09:50 +0100
yep. that would be it alright. Sorry.
regards
Brian
On Sat, Apr 4, 2009 at 6:28 PM, Bastien Chevreux <bach@xxxxxxxxxxxx> wrote:
> On Friday 03 April 2009 Brian Forde wrote:
> > [...]
> > but keep getting the following error.
> >
> > Fatal Error: "While trying to load SANGER type data: type of
> > file to load unknown"
> > ->Thrown: void Assembly::loadSequenceData()
> > ->Caught: main
> > Program aborted.
>
> Hi Brian,
>
> I'd attribute this to the typo in the command line. The parameter
>
> -LR:sanft=fofexp
>
> should be written
>
> -LR:sanft=fofnexp
>
> (mind the additional 'n'). But I'm surprised the parameter parser did not
> catch this, probably a bug.
>
> > Also is there a difference (i'm assuming not) between the gbf files mira
> is
> > looking for and the gb files downloadable from genbank
>
> No difference. I've seen GenBank files with a number of endings (.gb, .gbk,
> .gbf, .gbff (the later containing multiple entries)) and I somehow settled
> for
> ".gbf" (and the ability to read multiple entries).
>
> Regards,
> Bastien
>
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