[mira_talk] Re: Fwd: mapping
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Sat, 4 Apr 2009 19:28:19 +0200
On Friday 03 April 2009 Brian Forde wrote:
> [...]
> but keep getting the following error.
>
> Fatal Error: "While trying to load SANGER type data: type of
> file to load unknown"
> ->Thrown: void Assembly::loadSequenceData()
> ->Caught: main
> Program aborted.
Hi Brian,
I'd attribute this to the typo in the command line. The parameter
-LR:sanft=fofexp
should be written
-LR:sanft=fofnexp
(mind the additional 'n'). But I'm surprised the parameter parser did not
catch this, probably a bug.
> Also is there a difference (i'm assuming not) between the gbf files mira is
> looking for and the gb files downloadable from genbank
No difference. I've seen GenBank files with a number of endings (.gb, .gbk,
.gbf, .gbff (the later containing multiple entries)) and I somehow settled for
".gbf" (and the ability to read multiple entries).
Regards,
Bastien
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